Gene Lcho_2553 details

Gene Information

• Locus tag: Lcho_2553
• ID: 6163538
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2787315
• End bp: 2787893
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641665328
• Product: MotA/TolQ/ExbB proton channel
• Protein accession: YP_001791583
• Protein GI: 171059234
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0811] Biopolymer transport proteins

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 0.00158299
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

TTGATTCTGT GCTCCATCGC CGCGCTGGCG CTGATCATCG AGCGCCTCGC CAACCTGCGT 
GAAGTCAAGG TGGCACCGCC CAAGCTGCTC GACGAAGTGC TGGGCCTGAC ACGCAGCGGC 
CTGCCGTCCG ACGACGTGCT GCGCAAGCTG GCCGACAACT CGGTGCTCGG CTCGGTGCTC 
GCCGCCGGCA TCCGCAGCGC GACGCCTTCG CGCGGCACCA ACGAGGCGCA GCTGCGCAAG 
GCCTTCGAGT CGGCCGGCCG CGCCGCCGTG CACAAGCTCG AGCGCTACCT CAACGCGCTG 
GGCACCATCG CGTCGGCGGC GCCGCTGCTG GGCCTGCTCG GCACGGTGGT GGGCATGATC 
GAGATCTTCG GCGCGCAGAG CCCGACCTCG GGCAGCAACC CGGAAATGCT CGCCCACGGC 
ATCTCGGTGG CGCTCTACAA CACCGCCTTC GGCCTGATCA TCGCGATCCC GTCGCTGATG 
TTCTACCGCT ACTTCCGCGG CCGGGTCGAC GCCTTCGTGC TCGATCTCGA ACTGGCCGCC 
GAGCGCCTGC TGCCGCACCT GCTGCGCCAC GGATCATGA 

 

Protein sequence

MILCSIAALA LIIERLANLR EVKVAPPKLL DEVLGLTRSG LPSDDVLRKL ADNSVLGSVL 
AAGIRSATPS RGTNEAQLRK AFESAGRAAV HKLERYLNAL GTIASAAPLL GLLGTVVGMI 
EIFGAQSPTS GSNPEMLAHG ISVALYNTAF GLIIAIPSLM FYRYFRGRVD AFVLDLELAA 
ERLLPHLLRH GS