| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2497 |
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| Symbol | |
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| ID | 6160676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2718370 |
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| End bp | 2719899 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665267 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001791527 |
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| Protein GI | 171059178 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02645] putative thymidine phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000000364151 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCCGC CTGACCTGCG CATCCGCCGC GTCGCCATCG ACACCTGGCG CGAGAACGTC
GCCTACCTGC ACCGCGACTG CCCGGTGGTG CGGGCCTCGG GTTTCCAGGC GCTGTCGAAG
GTGACGGTGC ACGCCAACGG CACCACCATC AGCGCGGTGC TCAACGTGGT CGACGACGAG
CGCATCGTGC AGGCCTGCGA GCTGGGCCTG TCCGAAGACG CCTTCGCACG CATGAACGTG
CCCGAGGGTC ACGCCGCCCA TGTGGCGCCG GCCGAGCCGC CTGCCTCGAT CGGCGCGCTG
CACCGCAAGA TCGGCGGCGA GCGGCTGTCG CGCGACGACC TGCACGCGAT CGTGCGCGAC
ATCGCCCAGG CGCGTTATTC CAAGATCGAG CTGGCCGCCT TCGTGGTCGC CACCAACGGC
TACGACCTCG ACCGCGACGA GGTGCTGCAC CTCACCGAGG CCATGATCGC CGCCGGCCGC
CGGCTCGACT GGCAGCACCA GGTGCGCGGC GGGCCGGTGG TCGACAAGCA CTGCATCGGC
GGCATCCCGG GCAACCGCAC CTCGATGCTG GTGGTGCCGA TCGTCACGGC GCACGGCATG
CTGTGCCCCA AGACCTCGTC GCGCGCCATC ACCTCGCCGG CCGGCACCGC CGACACGATG
GAGGTGCTGG CCGAGGTCGA GCTGCCCTTC GAGCGGCTGA CGCAGATCGT GCGCGACACC
AACGGCTGCC TGGTGTGGGG TGGCCGCGCC GGGCTGTCGC CGGCCGACGA CATCCTGATC
TCGGTCGAGC GGCCGCTGGC GATCGACTCG CCCGGCCAGA TGGTGGCCTC GATCCTGTCC
AAGAAGATCG CCGCCGGCTC GACCCACCTG GTGCTCGACA TCCCCGTCGG CCCGACCGCC
AAGGTGCGCT CGATGCCGGC CGCGCAGCAG CTGCGCAAGC TGTTCGAGTA CGTCGCCGAC
CGGCTCGGCC TGCACCTCGA GGTGGTGATC ACCGACGGCA GCCAGCCGAT CGGCAGCGGC
ATCGGCCCGG TGCTGGAGGC GCGCGACGTG ATGCGCGTGC TGCGCAACGA CCCGGCGGCG
CCGGCCGACC TGCGCGACAA GTCGCTGCGC CTGGCCGGCC GCGTGATCGA GTTCGACCCC
GACGTGCGCG GCGGCGACGG CTGGCGCATC GCCCGCGACA TCCTCGAATC GGGCCGTGCG
CTGGCGCAGA TGAACGCCCT GATCGACGCC CAGGGCCGCC GCCTGCAGCC GCCCGCGCTC
GGCGAGATGA CGCACGAGGT GATCGCGCCG GCCGACGGCG CGGTCAGCGC GATCGACAAC
CTGCAGCTCG CCCGCATCGC CCGCCTGGCC GGCGCCCCGC AGGTGATCGG CGCCGGCGTC
GACCTGTTGC GCAAGCAGGG CGATGCGGTG CAGGCCGGCC AGCCGCTCTA CCGCATCCAC
GCCTGCTACG CCGCCGACCT GGGGTTCTCG CGCGACTTGG CCGCGCGCGA CAGCGGCTAC
ACCGTCGCCG CCACCACCCG CCCGTCATGA
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| Protein sequence | MNPPDLRIRR VAIDTWRENV AYLHRDCPVV RASGFQALSK VTVHANGTTI SAVLNVVDDE
RIVQACELGL SEDAFARMNV PEGHAAHVAP AEPPASIGAL HRKIGGERLS RDDLHAIVRD
IAQARYSKIE LAAFVVATNG YDLDRDEVLH LTEAMIAAGR RLDWQHQVRG GPVVDKHCIG
GIPGNRTSML VVPIVTAHGM LCPKTSSRAI TSPAGTADTM EVLAEVELPF ERLTQIVRDT
NGCLVWGGRA GLSPADDILI SVERPLAIDS PGQMVASILS KKIAAGSTHL VLDIPVGPTA
KVRSMPAAQQ LRKLFEYVAD RLGLHLEVVI TDGSQPIGSG IGPVLEARDV MRVLRNDPAA
PADLRDKSLR LAGRVIEFDP DVRGGDGWRI ARDILESGRA LAQMNALIDA QGRRLQPPAL
GEMTHEVIAP ADGAVSAIDN LQLARIARLA GAPQVIGAGV DLLRKQGDAV QAGQPLYRIH
ACYAADLGFS RDLAARDSGY TVAATTRPS
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