| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2467 |
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| Symbol | |
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| ID | 6162560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2679071 |
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| End bp | 2680642 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665237 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001791497 |
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| Protein GI | 171059148 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00000299001 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACATTGC GCACCCTGGC CGTCCTGGCC ATCTCGATCG GCAGCGCCTG GACGGCCGGC
CCGACCCACG CACAGGGCTT CGTGTTCGGC ACCGACGCAC CCAAGGACCA GGCCGCCGCA
CCCGCGGGCG CCCGCAGCGC CAAGGTCGAG ACCGCCCAGC GCCTGCTGGC CCGCATGGGC
CTGTACCGCG AAACGCCGAC CGGCACGCTG ACGCCGGCCA CGCAGGAGGC GATCCGCGCC
TTCGCGGCGC AGAACGGCCT GGCGCCGACG AATCAGGTCA CCGACCCGCT GCTCAACGCG
ATCCGCCGCG TCATCTGGCA GACCCAGAAA TGGGCGGGCG GCAACTACAA GGGCCGCGAG
AAGCTGGTCG ACGCCGCCGG CCTGCGCGAG GCGCAGATCC TGCTGGGCAA GCTCGGCTTC
GACGCCGGCC CGCTCGACGG CACCTTCGGC CCGCAGACGC AGGTGGCAGC CGAGGCCTTC
CAGGAGTCGC AGAAGGTCAC GGTCGACGGC CTGATCACCG CCACCGTGCT GATGAACCTG
CGCCGCGCCG TCAACGGCGT GGGGGCGTCG GCCAAGTCGA CGGTGCGGGT GCTCAACTGG
CCCGACTACA TCGAGCCCGG CGTGCTGCAG GACTTCGAGA AGGAGACCGG CATCCGCGTG
GTCTACGACA TCTTCGCCAA TGCCGGCGAC CTCGAAGCCA AGCTGCGCAA CACCGCCGCG
CCGTATGACG TGGTGTTCCC GACCGCCAAC TCGGTGCCCG CGCTGGCCAC ACAAGGGCTG
CTGGCCAAGC TCGACAAGCC GAGCCTGAAG AACCTCGCCA ACCTCGACCC GCGGGTCGAC
GCCACGCTGC GTTCGTGGGA CAAGGACGGC GCCTACAGCC TGCCCTACAT GTGGTACACG
GTCGGCATCG CCTGGAACCC CAAGCTGACC GAACGGGCCT ACCCCGGCCA CGCGATGGAC
ACGCTGACCA GCGTGTTCGA TGCCGAGACG GCACGGCGCT TCAAGTCCTG CGGCATCGGC
GTGGTCGACT CGGCCACCGA CGTGGTGCCG CTGGCCGCGA TGGCCGGCGG GCAGCCGCGC
TGGAGCGGCA AGGCCTCCAT CAACGCGGCC TCGCAGGTGC TCGACAAGCT GAGCGGCACG
GTCAAGGTGA TTCCGACCGA CCAGTTCATC GACGCGCTGG CCAGCGGCAA GATCTGCGTG
GCGATCGGCT TTTCGGGCGA CGCGGTGCAG GCGCAGAGCA AGTCGCGCGG CGCGGTCGAA
TACCGCGTGC CGTCGGACGG CGGGCTGCTG GCGATCGACG CCATGGCCAC GCCGGCCAAC
GCGAAGAACA GGCGCGAGGC GCACCTGTTC ATCGACTACC TGCTGCGCCC GCAGGTGATC
GCCAGGGTCT CCAACACCGT GGGCTACGCC AACGCCAACC TCAAGGCCGG CGAGTTCATG
AACGACAGCA TCAAGGCCAA CCCGGCGGTG GTGCCGAGCG CGACGTCGCT GAGCCGCTCG
TCGCCGATCC CGATCCTGTC GGAGCAGGAC CAGCGCGACA TCGAACGCCT GTGGTCGAAG
TTCGCCAAGT AG
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| Protein sequence | MTLRTLAVLA ISIGSAWTAG PTHAQGFVFG TDAPKDQAAA PAGARSAKVE TAQRLLARMG
LYRETPTGTL TPATQEAIRA FAAQNGLAPT NQVTDPLLNA IRRVIWQTQK WAGGNYKGRE
KLVDAAGLRE AQILLGKLGF DAGPLDGTFG PQTQVAAEAF QESQKVTVDG LITATVLMNL
RRAVNGVGAS AKSTVRVLNW PDYIEPGVLQ DFEKETGIRV VYDIFANAGD LEAKLRNTAA
PYDVVFPTAN SVPALATQGL LAKLDKPSLK NLANLDPRVD ATLRSWDKDG AYSLPYMWYT
VGIAWNPKLT ERAYPGHAMD TLTSVFDAET ARRFKSCGIG VVDSATDVVP LAAMAGGQPR
WSGKASINAA SQVLDKLSGT VKVIPTDQFI DALASGKICV AIGFSGDAVQ AQSKSRGAVE
YRVPSDGGLL AIDAMATPAN AKNRREAHLF IDYLLRPQVI ARVSNTVGYA NANLKAGEFM
NDSIKANPAV VPSATSLSRS SPIPILSEQD QRDIERLWSK FAK
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