| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2226 |
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| Symbol | |
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| ID | 6160636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2428734 |
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| End bp | 2432789 |
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| Gene Length | 4056 bp |
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| Protein Length | 1351 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664996 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001791257 |
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| Protein GI | 171058908 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0855777 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATAATC CAGCCCCCGT GAACCCACCT ATCGCCGAAG CTGGCGGCAT CGAATCGCGC
AGCCCCGCTC GCCGGCCCGC CCGGCCACCC CGGCCGGCCA CGCCGATCCC GCCCATCACC
TACCCCGAAT CGCTGCCGGT CTCCGCCCGG CGCGAGGAGA TCGCGCAGGC CCTGCGCGAT
CACCAGGTCG TCATCGTCTG CGGCGAGACC GGCTCGGGCA AGACCACCCA GCTGCCCAAG
ATCGCGCTCG AACTCGGCCG CGGCTGGGGT GCCGGTGGCA GCGGCCTGAT CGGCCACACC
CAGCCGCGGC GGATTGCCGC CAGCTCGGTG GCCAAGCGCA TCGCCGACGA GCTGAAATCG
CCGCTGGGCG AGGTGGTCGG CTACAAGGTG CGCTTCCAGG ACCGCCTGCA GGCCGGCGCC
AGCGTCAAGC TGATGACCGA CGGCATCCTG CTGGCCGAGA CGCAGACCGA TCCGCTGCTC
AAGGCCTACG ACACGCTGAT CATCGACGAG GCGCACGAGC GCAGCCTCAA CATCGACTTC
CTGCTCGGCT ACCTGCGCCA GATCCTGCCG CGCCGGCCGG ACCTGAAGAT CGTCGTCACC
TCGGCCACGA TCGACGCGGA TCGCTTCGCG CAGCACTTCG CCAGCGCCAA GGGCCCGGCG
CCCGTATTGA TGGTCAGCGG CCGGCTGTTC CCGGTCGAGC AGCGCTACAA GCCGTTCGAG
GAAAGCCGCG AATACGACCT GAACACGGCC ATCGCCGACG CGGTCGACGA ACTCTGGCGC
GGCATGGCGG GCGGCGACAT CCTGGTGTTC CTGCCCGGCG AGCGCGAGAT CCGCGAGGCC
GCCGACCACC TGCGCAAGCA CCTGGCGCAC CAGCCGCTGC ACCGCAACGC GCAGATCCTG
CCGCTGTTCG CGCGCCTGTC GCAGCAGGAG CAGGACCAGG TCTTCGAGAC CGGCCGCCAG
CAGCGCATCG TGCTGGCCAC CAACGTGGCC GAGACCTCGC TGACCGTGCC CGGCATCCGC
TACGTGATCG ACTCGGGTCT GGCGCGGGTC AAGCGCTACA GCTACCGCAG CAAGGTCGAG
CAGCTGCAGA TCGAGCCGAT CAGCCAGGCC GCGGCCAACC AGCGCGCGGG CCGCTGCGGG
CGGGTGGCCA ACGGCATCTG CATCCGGCTC TACGACGAGA AGGACTTCAC CGGCCGGCCA
CGTTTCACCG ACCCCGAGAT CCTGCGCTCG TCGCTGGCCG GCGTGATCCT GCGCATGAAG
TCGCTGCACC TCGGTCTGAT CGACGACTTC CCCTTCCTCG AGCCGCCGCC GCGCAAGGCG
ATCGCCGACG GCTACGCGCT GCTGGGCGAG CTCAACGCGG TCGACGACGC CAACGAGCTG
ACCCCCATCG GCCGCGAACT GGCCAAGCTG CCGCTCGATC CGCGCGTCGG CCGCATGATC
CTGGAGGCGC GTGACCGCCA GGCGCTCGAC GAGGTGCTGA TCATCGCCAG CGCGCTCAGC
GTGCAGGACG TGCGCGACCG CCCGATGGAA GCCGCGCAGG CGGCTGACGA AAAACACAAG
AAGTTCGACG ACGAGAAGTC GGAGTTCACC GGCTACCTCA AGCTCTGGCG CTGGATCGAG
GAAGGGCGCG GCCATGCCGA GGCGCTGCCG ACGGCCGGTC CGCGTCCGAC CGCCACCGGC
CGCAAACCCG GCCCGCCCGA GACCCGCCCG GCCCAGGCCC AGAACGCTGC ACACAAGCTC
AGCAACCGCC AGCAGGAACA GCGCCTGCGC GACAGCTTCG TCAGCCCGCG CCGGGTGCGC
GAGTGGCGCG ACATCCACAG CCAGCTGCAC ACGGTGGTGG CCGAACACGG TTGGCGGCTC
AACACCGCGC CGGCCAGCTA CGAGCAGCTG CACCTGTCGA TGCTCGCCGG CCTGCTCGGC
AACGTCGGCC TGAAGAGCGA AGACGAGGAC TGGTACCTCG GCGCACGCGG CATCAAGTTC
TACCGTCATC CCGGCGCACA CCTGAGCAAG AAACCCGGCC GCTGGCTGGT GGCGGCCGAG
CTGGTCGAGA CCACCCGGCT GTTCGGCCGC GGGCTGGCGG CGATCGAGCC GCAGTGGATC
CCGCAGATCG CCGGCCACCT GCTGAAGACG CAGCTGCTGG AGCCGCACTG GGAGAAGAAG
GCCGCCGAGG TGATCGCGCT CGAGCGCGCC ACGCTCTACG GCATCGTGAT CTACAGCAAC
CGGCGGGTGA ACTACGGCCT GGTCGACCCG AAGGTGGCAC GCGAGATCTT CATCCGCGAG
GCACTGGTCA ACGGCGAGTG GGAATCGAAG CTGCCGTTCC TGGCCCACAA CGCCAGGATG
ATCCGCCAGG TCGAGGAACT CGAGCACAAG TCGCGCCGCC AGGACGTGCT GGTCGACGAC
GAGCTGATCC ACGCCTATTA CGACCAGCAG CTGCCGGCCG AGATCGTCAG CGGCGCGAGC
TTCGAGCGCT GGTACCGCGC CGAGCAGAAG AAGCAGCCCA CGCTGCTGCA CCTGACACGC
GACGAGCTGA TGCGCCACGA GGCCGCGGGC ATCACGACGT CGGCCTTCCC GAAGACGATC
CGGCTGGGCG GCGTGGATTG CGCAGCCACC TACCTGCACG AACCCGGCGA CGCCAAGGAC
GGTGTCACGG TGACCGTGCC GATCTACGTG CTCAACCAGG TCAACGAAGA CCCTTGCGAC
TGGCTGGTGC CCGGCATGAT CGAGGCCAAG GTGCTGGCGC TGGTCAAGAC GCTGCACCAG
CGGCCGCGCT CGCGGCTGGT GCCGCTGCCG GACTACGTGG CCGAGTTCCT GGAGCTGGCG
CCGTTCGGCC AGGGCAACCT GCTCGACGTG CTGCTCAAGG CGGTGCGCGA ACGCACCCAG
ATCGCCGTGC AGCGCAACGA CTTCAAGCCC GAGCAGCTGG CGCCGCATCT GTTCATGAAC
TTCCGGGTGG TCGACGAGCA CGGCCGCCAG CTCGGCATGG GGCGGCACCT CGCCGCGCTC
AAGGCCGAGC TGGGCGGGCA GGCGCGGTCG GCCTTCCAGG CGCTGGCGGC GATCAAGCTC
AGTGCCGGCG TGAACGCGGC CGCCAGTGGC GCCGCCTCCG CCCATGCGGC GCCCGATCGA
GCGGCGAGCG GGAGCACCGC GGCCCCATCC GGCCCGCGCC GCGTCAGCGG CCAACCCGAA
GCGCCGGCCG CGGCGCTGGC CGCGCCGCCT GCGATCTACA CCGCCTGGAC CTTCGGCGAG
CTGCCCGAAC TGATGGAGAT CCGCAAGGCC GGCCAGACGC TGGTGGGTTT CCCGGCGCTG
ATCGACCGCG GCACGCATGT CGAGATCGAG GTCTTCGACG AGCCCGAAGC GGCCGCCGCC
AAGCACCGCG CCGGCCTGCG CCGGCTGGTC GCCTTGCAGA TCAAGGAGCC GCTGAAGTAC
CTGGAAAAGA ACATCCCGGA CCTGACGAAG ATGGCGGTCG CCTTCATGCC GCTGGGCTCG
ATGGAAGAAC TGCGCACGCA GATCATCGAC GTCGCGCTCG ACCGCGCCTT CCTGGCCGAG
CCGCTGCCGA CCGACGCGCT CGCCTTCAAG GGTCGCATCG ACGAGGGCCG CACGCGCCTG
AACCTGATCG CGCAGGAGGT GGCGCGCATC GCCGGGGTGG TGCTGATCGA GTTTGCCGCG
GCCGCCCGCA AGCTCAAGGA CAGCCGGGCG CCCAAGGACG TCGCCGACGA CATCACCGGG
CAACTGCAGC GGCTGGTGCC CAGGCTGTTC ATCGTGTCGA CACCGTGGGC GCAGCTGCAG
CACCTGCCAC GGTATTTGAA GGCGATCACG CAGCGGCTCG ACAAGTACCG CGCCGATCCG
GCCCGCGATG CGCAGCGCCT GGCCGAGCTG CGCCCGCTCG AGCAGCGCTA CATCCGCCGC
CTGGCCGAGC GCAAGGGCGC GGCCGATGCG CGGCTGGACG AATACCGCTG GCTGCTCGAA
GAACTGCGCG TGAGCCTGTT CGCGCAGGAG CTGCGCACGC CGCAGCCGGT CAGCGCCAAG
CGGCTCGACA AGGTCTGGAG CCAGCTCAGC AGCTGA
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| Protein sequence | MDNPAPVNPP IAEAGGIESR SPARRPARPP RPATPIPPIT YPESLPVSAR REEIAQALRD
HQVVIVCGET GSGKTTQLPK IALELGRGWG AGGSGLIGHT QPRRIAASSV AKRIADELKS
PLGEVVGYKV RFQDRLQAGA SVKLMTDGIL LAETQTDPLL KAYDTLIIDE AHERSLNIDF
LLGYLRQILP RRPDLKIVVT SATIDADRFA QHFASAKGPA PVLMVSGRLF PVEQRYKPFE
ESREYDLNTA IADAVDELWR GMAGGDILVF LPGEREIREA ADHLRKHLAH QPLHRNAQIL
PLFARLSQQE QDQVFETGRQ QRIVLATNVA ETSLTVPGIR YVIDSGLARV KRYSYRSKVE
QLQIEPISQA AANQRAGRCG RVANGICIRL YDEKDFTGRP RFTDPEILRS SLAGVILRMK
SLHLGLIDDF PFLEPPPRKA IADGYALLGE LNAVDDANEL TPIGRELAKL PLDPRVGRMI
LEARDRQALD EVLIIASALS VQDVRDRPME AAQAADEKHK KFDDEKSEFT GYLKLWRWIE
EGRGHAEALP TAGPRPTATG RKPGPPETRP AQAQNAAHKL SNRQQEQRLR DSFVSPRRVR
EWRDIHSQLH TVVAEHGWRL NTAPASYEQL HLSMLAGLLG NVGLKSEDED WYLGARGIKF
YRHPGAHLSK KPGRWLVAAE LVETTRLFGR GLAAIEPQWI PQIAGHLLKT QLLEPHWEKK
AAEVIALERA TLYGIVIYSN RRVNYGLVDP KVAREIFIRE ALVNGEWESK LPFLAHNARM
IRQVEELEHK SRRQDVLVDD ELIHAYYDQQ LPAEIVSGAS FERWYRAEQK KQPTLLHLTR
DELMRHEAAG ITTSAFPKTI RLGGVDCAAT YLHEPGDAKD GVTVTVPIYV LNQVNEDPCD
WLVPGMIEAK VLALVKTLHQ RPRSRLVPLP DYVAEFLELA PFGQGNLLDV LLKAVRERTQ
IAVQRNDFKP EQLAPHLFMN FRVVDEHGRQ LGMGRHLAAL KAELGGQARS AFQALAAIKL
SAGVNAAASG AASAHAAPDR AASGSTAAPS GPRRVSGQPE APAAALAAPP AIYTAWTFGE
LPELMEIRKA GQTLVGFPAL IDRGTHVEIE VFDEPEAAAA KHRAGLRRLV ALQIKEPLKY
LEKNIPDLTK MAVAFMPLGS MEELRTQIID VALDRAFLAE PLPTDALAFK GRIDEGRTRL
NLIAQEVARI AGVVLIEFAA AARKLKDSRA PKDVADDITG QLQRLVPRLF IVSTPWAQLQ
HLPRYLKAIT QRLDKYRADP ARDAQRLAEL RPLEQRYIRR LAERKGAADA RLDEYRWLLE
ELRVSLFAQE LRTPQPVSAK RLDKVWSQLS S
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