Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2216 |
Symbol | |
ID | 6160981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2418828 |
End bp | 2420123 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664985 |
Product | peptidase M16 domain-containing protein |
Protein accession | YP_001791247 |
Protein GI | 171058898 |
COG category | [R] General function prediction only |
COG ID | [COG0612] Predicted Zn-dependent peptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.437046 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCGC TCTCCCACGA CGCCGACACC ACCGTGATCA CGCTGCCCAA CGGCGTGCGC GTGCTCGCCA TCGCGCTGCC GCACCTGGCG AGCGTGAACG TCAGCGTGTT CGTGCGCACC GGCAGCCACC ACGAGAGCCG GCGCCTCAAC GGCATCAGCC ACGTGGTCGA GCACATGGCG TTCAAGGGTA CGCACGGGCG TACCTGCCAG CAGATCAACC TCGACGCCGA ACGGCTGGGC GCCGACGTCA ACGCCCACAC CGACAAGGAC CACACCGCCT ACCACATGCG CGGCCTGGCA CAGCATGCCG GCGTGTTCGT GCAGATGCTG GGCGACATCG TGCGCAACAG CACCTTCCCC GAGGCCGAGC TCGAGCGCGA GCGCCAGGTC ATCCTGCACG AGTACACCGA AGATGAAGAC GACGCACTGA CGCAGGGCTA CAAGCTGTTC GACCGCCTGT GCTTCGGCAG CCACGCCGCC GCGCAGCCGG TGATCGGCGT GCGCGCCAAC ATCGAACGCT TCACGCGCCA GGACCTGCTC GACTACGTGC AGCAGCGGTA CAGCGCGCCC AACGTGATCG TCGCGGTGGC CGGGCCGGTC GACCCGCAGG CGATCGCCCG CGAGGCCGAG GCGGCGTTCG GCACGATGGC CTCGGGCCCC GTCAACCGCG TGACGGCGCC GCACTGGGTC GGCGGCTTGC GCACCCATCG GCAGGCCGGC TGCAGCCAGA CCCACGTGGT GCTGGGTTTT CCGGCACCGG CGCTGCGTTC GCAGCCGCAG GCGGCGATCG TGGCTGCCGC GGTGCTCGGC GAGGGCATGA GCTCGCCGCT GCTCGACACC CTGCGCGAGC GCCGTGGCCT GGCCTATTAC GCCGCCTGCT CGACCGACAT CACCGAGATC GCCGGCCAGT TCATGGTCGA GGCGTCGACC TCGGCCGAAC ACCTCGACGA CTTCTTCGAC GAGGTCGGCC AGCTGCTGCG CACCCAGGCC GAGCGCATCC AGCCGATCGA CCTGGAGCGC GCGCGCAACC AGCTCGCCAT GCGCGGCCTG CGCAACTTCG AGCGGCCGCA GCGTCGGCTC GAATCGGCTG CGCTGGACCT GTACGTGTTC GGCCACGTGC GCTCGCGCGC CGAGTGGCAG GCCGGCATCG ACGCGGTCAG CGCGGATCAG GTGCGCACCG AGTTTGCGCG CCTGATCGGC TCGCCGGTGG CGGTGGCGAT CGCCGGCAAG GTGCCGGCGC GTGCCAAGGA ACGCGCGCTC GAACGCCTGG CGGTGCTCGG CGGCCGGCCG GCCTGA
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Protein sequence | MNPLSHDADT TVITLPNGVR VLAIALPHLA SVNVSVFVRT GSHHESRRLN GISHVVEHMA FKGTHGRTCQ QINLDAERLG ADVNAHTDKD HTAYHMRGLA QHAGVFVQML GDIVRNSTFP EAELERERQV ILHEYTEDED DALTQGYKLF DRLCFGSHAA AQPVIGVRAN IERFTRQDLL DYVQQRYSAP NVIVAVAGPV DPQAIAREAE AAFGTMASGP VNRVTAPHWV GGLRTHRQAG CSQTHVVLGF PAPALRSQPQ AAIVAAAVLG EGMSSPLLDT LRERRGLAYY AACSTDITEI AGQFMVEAST SAEHLDDFFD EVGQLLRTQA ERIQPIDLER ARNQLAMRGL RNFERPQRRL ESAALDLYVF GHVRSRAEWQ AGIDAVSADQ VRTEFARLIG SPVAVAIAGK VPARAKERAL ERLAVLGGRP A
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