| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2136 |
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| Symbol | |
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| ID | 6162920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2338991 |
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| End bp | 2340010 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664905 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001791168 |
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| Protein GI | 171058819 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00204406 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACGAC TGCATTCATC CGTTCTGGCG CTCGCCCTGC TGGCCGCCGC CCCGGCCTTT
GCCGGCAAGA CGCTCGACAC CATCAAGCAG CGCGACCAGA TCCTCGTCGG CGTCAGCACC
GGCGTGGCGG GCTTCTCGGC CGCCGACAGC CAGGGCAAGT GGACCGGGCT CGACGTCGAC
GTCGGCCGCG CCATCGCCGC CGCCGTGCTG GGCGATGCCG ACAAGGTCAA GTGGGTGCCG
CTGGCCTCGC CGCAGCGCTT CACGGCGATC CAGTCGGGCG AGGTCGACGT GCTGTCGCGC
AACACCACCT TCACGCTCAC GCGCGATGCC TCGCTCGGCC TGCACCAGAC GGCGGTGGTC
TTCTACGACG GCCAGGGTTT CATGGTGCCG GCCAAGACCA AGGTCAAGAG CGCCAAGCAG
TTGAAGGGCG CCACCGTCTG CGTGCAGTCG GGCACCACCA CCGAGAAGAA CCTGACCGAC
TTCTCGCGCG CCAACAAGCT CAACCTGAAG CCGGTCGTGT TCGACAAGCT CGACGCAGCC
AACGCCGCCT ACTTCTCGGG CCGCTGCCAG GCCTACACCA CCGACGCATC GGGCCTGGCC
TCGATCCGCT CGAAGGAAGC CAAGGACCCG AAGGACCACG TGATCCTGCC CGAGCTGATC
TCGAAAGAGC CGCTCGGGCC GCTGGTGCGC CGCGGCGACG ACGAATGGTT CGCGATCGTC
AAGTGGGTGG TCTACGGCCT GATCGAAGCC GAGGAATCGG GCATCACGCA GGCCAACGTC
GACCAGCTCA AGGCCGACAG CACCGACCCC GTCGTGCAGC GCCTGCTCGG CAAGACCGAA
GACACCGGCA AGCTGCTCGG CCTGGACCGC GAGTGGCTGG CGCGCGCCAT CAAGGCGGTG
GGCAACTACG GCGAGATCTA CGAGCGCAAC GTCGGCGAGA AGACCCCCGT CGGCCTGCCG
CGTGGCAAGA ACGCGCTCTG GACCAACGGC GGCCTGCAGT ACGCGATGCC GATCCGCTGA
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| Protein sequence | MKRLHSSVLA LALLAAAPAF AGKTLDTIKQ RDQILVGVST GVAGFSAADS QGKWTGLDVD
VGRAIAAAVL GDADKVKWVP LASPQRFTAI QSGEVDVLSR NTTFTLTRDA SLGLHQTAVV
FYDGQGFMVP AKTKVKSAKQ LKGATVCVQS GTTTEKNLTD FSRANKLNLK PVVFDKLDAA
NAAYFSGRCQ AYTTDASGLA SIRSKEAKDP KDHVILPELI SKEPLGPLVR RGDDEWFAIV
KWVVYGLIEA EESGITQANV DQLKADSTDP VVQRLLGKTE DTGKLLGLDR EWLARAIKAV
GNYGEIYERN VGEKTPVGLP RGKNALWTNG GLQYAMPIR
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