Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1991 |
Symbol | |
ID | 6163239 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2159153 |
End bp | 2160109 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664760 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_001791023 |
Protein GI | 171058674 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00000158404 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAGCTCC ACTACAGCGA CCACTTCGTG CTGCCCCTGC CGGCAGGGCA TCGTTTCCCG ATGCACAAGT ACCGGTTGCT GCGCGACGCC GTGGCGGCCG AACTGGCCGC GGTCAGGCTG GTCCAGGCTG CGGCGGCCAG CGACGGCGAA CTGGCCCTGG TGCACGAACC CGCCTATGTC GACGCCGTGC AGCACGGCAG GCTGAGCGCG CAGCAGGAGC GCGAGATCGG TTTTCCGTGG TCGCCCGCGA TGGCCGAGCG GGCCCGGCGC TCGGTGGGCG CGACCATCGC CGCCGCACGC TGCGCACTGG CCGAAGGCAT CTCGGGCAAC CTGGCCGGCG GCACCCATCA CGCCAGCGCC GGCGGCGGCA GCGGCTTCTG CGTCTTCAAC GACGTGGCCG TGGCCGCGCG ACTGATGCAG GCCGAGTGGC ACCGTCGGCA TCGACAGTTC CTGCGTATCG CGGTGATCGA CCTCGACGTG CACCAGGGCA ACGGCACGGC GTCGATCTTT GCCGACGATC CGATGGTCTA CACGCTGTCG ATGCACGGCG AAAAGAACTT CCCGTTCCGC AAGGTGGCCA GCGACCACGA CGTCGATCTG CCCGACGGCT GCACCGATGG GCCGTATCTG CAGGCGCTCG ACGCTGCGCT GGAACGGCTC TGGCAGCACC ACGCCGAGTC ACCGCCGGGG CTGATCTTCT ACATCGCCGG CGCCGATCCG CACGAGGGCG ACCGGCTCGG CCGCCTCAAG ATCAGCGCCG CCGGCCTGGC CGAACGCGAT CGGCGCGTGC TGCAGGCCGC CCGCCAACGC GGCGTGCCGG TGGCGATCAG CATGGGCGGC GGCTACGGCC GGACGATCGA GGACACCGTG GCGGTGCAGA TGCAGACCTG GCGCGAGGCG CTCGCATGCT GGCATCAGTG GCCCCGTCAG ACCCGCGGCG CGCTGGCCGA CGCGTGA
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Protein sequence | MQLHYSDHFV LPLPAGHRFP MHKYRLLRDA VAAELAAVRL VQAAAASDGE LALVHEPAYV DAVQHGRLSA QQEREIGFPW SPAMAERARR SVGATIAAAR CALAEGISGN LAGGTHHASA GGGSGFCVFN DVAVAARLMQ AEWHRRHRQF LRIAVIDLDV HQGNGTASIF ADDPMVYTLS MHGEKNFPFR KVASDHDVDL PDGCTDGPYL QALDAALERL WQHHAESPPG LIFYIAGADP HEGDRLGRLK ISAAGLAERD RRVLQAARQR GVPVAISMGG GYGRTIEDTV AVQMQTWREA LACWHQWPRQ TRGALADA
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