| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1985 |
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| Symbol | |
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| ID | 6163282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2152240 |
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| End bp | 2152797 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664754 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001791017 |
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| Protein GI | 171058668 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4566] Response regulator |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0000655544 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACCGACC TCGACTACCG CACCGCCTTC GACCTGGCGC CGATCGGCAT GGTGCTGTCA
CGCAACCGGC TGATGGTCGA CTGCAACCAG CAGCTGCTGG CGATGTTCGG CGCCCAGCGC
GACCAGCTGA TCGGCCAGAG CTTCGAGGTG CTGTACCCGA GCACGGCCGA GTTCGAGCGC
ACCGGCGCAC GCATCGTCGC CAGCCTCGGG CGTGACGGGC GCTACGCCGA CGAGCGGGTG
ATGCGCCGAC TGAGCGCGCC TGCGGGCAGC GAGCTGTTCT GGTGCCACGT GTCGGGCCGT
GCGCTCGACC CGGCGCAGCC GCACGCGGCG GGCATCTGGA CCTTCGAGGA CCTGTCGGCG
GTGCGTCAGC TGAAAGCCGA CCTGACGCCG CGTGAACGCG AGATCGCCGC GCTGCTGATC
GAGGGCCTGA CCAGCAAGCT GATCGGCAAG CGCCTGGTGA TCAGCCCGCG CACGGTCGAC
GTCTATCGCG CCCGGCTGAT GCGCAAGTAC GAGGCCGCGA CCACGCCCGA GCTGGTGCAC
AAGCTGCTGA GCGCCTGA
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| Protein sequence | MTDLDYRTAF DLAPIGMVLS RNRLMVDCNQ QLLAMFGAQR DQLIGQSFEV LYPSTAEFER
TGARIVASLG RDGRYADERV MRRLSAPAGS ELFWCHVSGR ALDPAQPHAA GIWTFEDLSA
VRQLKADLTP REREIAALLI EGLTSKLIGK RLVISPRTVD VYRARLMRKY EAATTPELVH
KLLSA
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