Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1850 |
Symbol | |
ID | 6163372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2001092 |
End bp | 2002123 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664612 |
Product | inner-membrane translocator |
Protein accession | YP_001790882 |
Protein GI | 171058533 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGACCCGC TCGTCATCAA CCTGCTCAAC GGCCTCAGCT CGGGGCTGCT GCTGTTCATG CTCAGCGCCG GGCTGACGCT GATCTTCAGC ATGATGGGCG TGCTGAACTT CGCCCACGCG AGCTTCTACA TGCTGGGCGC CTACCTCGGC CACAGCCTGG CTGCGCCGCT GGGCTTCTGG CCGGCGCTGC TGCTGGCGCC GATTGCGGTC GGGCTGCTGG GCGCGCTGTT CGAGCGTGGC GTGCTGCGCC GCCTGCGTGG CCACGGCCAT GTGCCGGAGC TGCTGGTCAC GTTCGGGCTG TCGTACGTGG TGCTGGAGGG GGTGCAGCTG CTGTGGGGGC GCGGCCCGGT CGCATTCCAG CCGCCGGCCT TGTTGCAGGG CACGGCGTTC ACGATCGTGC AGTCGTCGGT TCACGGCCTG AGCCTCGTGG CCGGCCAGGC CGGCGCCGAG CTGTGCCGCG GTGGCGCCGA CGAGCTGGTG AGCTGCGCGC GCTTTCCGAT GACCCGCGCC TTCATGATGG TGGTGGCCTT GTTGATGCTG CTGGCGCTGG GGCTGCTGCT GCGGCGCACC CGCATCGGGC TGGTGATCCA GGCGGCGCTC GCGCACCCGC AGATGGTCGA GGCGCTGGGT CACGACGTGC CGCGGGTCTT CATGTGGGTG TTCGGCGGCG GCTGCGCGCT GGCGGCGCTG GCGGGCGTGA TCGGCGGCAT CACCTTCGTC ACCGAGCCGT CGATGGCCGC GGTGATGGGC AGCATCGTCT TCGTGGTGGT GGTGGTGGGT GGCATGGGTT CGCTGGCCGG CGCGTTCGTC GGCTCGATCC TGATCGGCCT GCTGCAGACC CTGCCGCTGG CGGTCGACGG CTCGCTCGCC AGCCTGCTCA ATGCGTTGGG CGCCGGTGTC GACGCCCGCA CGCCCGGCTG GCCGATCCTG CGCATCACGC TGGCGCAGGC CGCGCCGATC CTGCCGTATC TGCTGCTGGT GCTGATGCTG ATCGTGCGCC CGCGCGGGCT GCTCGGTGCG CGCGATGACT GA
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Protein sequence | MDPLVINLLN GLSSGLLLFM LSAGLTLIFS MMGVLNFAHA SFYMLGAYLG HSLAAPLGFW PALLLAPIAV GLLGALFERG VLRRLRGHGH VPELLVTFGL SYVVLEGVQL LWGRGPVAFQ PPALLQGTAF TIVQSSVHGL SLVAGQAGAE LCRGGADELV SCARFPMTRA FMMVVALLML LALGLLLRRT RIGLVIQAAL AHPQMVEALG HDVPRVFMWV FGGGCALAAL AGVIGGITFV TEPSMAAVMG SIVFVVVVVG GMGSLAGAFV GSILIGLLQT LPLAVDGSLA SLLNALGAGV DARTPGWPIL RITLAQAAPI LPYLLLVLML IVRPRGLLGA RDD
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