Gene Lcho_1805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1805 
Symbol 
ID6163444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1947393 
End bp1948061 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content71% 
IMG OID641664567 
ProductSCP-like extracellular 
Protein accessionYP_001790837 
Protein GI171058488 
COG category[S] Function unknown 
COG ID[COG2340] Uncharacterized protein with SCP/PR1 domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0000000690986 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAACGG ACGCCGCCCA CCGCTCCATC CACGCCCGAT CCAGGCACGC TGCGCTGACC 
CTGGCACTGA CGTTCACGCT GGCGCTCGCC GCATGCGGCG GTGGCGGATC CGATGGCGCG 
ACGGCGGCCG GCGCTGCACT GGCCGGCGGG TCCGGCAGCG CGATACCGGC CGACACCGGC 
GCCACCATCG CCGTCGGCAG CGACACCGCC AGCGCCGCCA GCGTCAGCCT GAGCACCGAC 
ACCACCTGCG GCAACACGCA GCTGCGCGCA CAGCTGATCG CCGGGATCAA CGCGCTGCGC 
GCCTCGGCGC AAAGCTGCGG CAGCAAAGGC AGCTTCGGCG CGGCCGGTCC GCTGACCTGG 
AACGCCGTGC TGTTCGACGC CGCCGCCGGC CACAGCACCG ACATGGCCAG CCGCAACTAT 
TTCAGCCACA CCAGCCCGGA AGGCCTGACG CTGCAAAACC GCGTCGACGC CGTCGGCTAC 
GAGTGGTCGA CATTGGCCGA AAACATCGCC GCCGGGCAAA CCAGCGTCGC CGCGGTGCTG 
AGCGCCTGGA TGGCCAGCCC CGGACACTGC GTCAACATCA TGGGCACGGC CTACCGGGAG 
GTGGCGCTGA GCTGCGCGCG CAGCGAATCC GGCACCCGCT ACTGGACGCT GAACCTCGGC 
CGCCCCTGA
 
Protein sequence
MKTDAAHRSI HARSRHAALT LALTFTLALA ACGGGGSDGA TAAGAALAGG SGSAIPADTG 
ATIAVGSDTA SAASVSLSTD TTCGNTQLRA QLIAGINALR ASAQSCGSKG SFGAAGPLTW 
NAVLFDAAAG HSTDMASRNY FSHTSPEGLT LQNRVDAVGY EWSTLAENIA AGQTSVAAVL 
SAWMASPGHC VNIMGTAYRE VALSCARSES GTRYWTLNLG RP