| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1777 |
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| Symbol | |
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| ID | 6162815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1916033 |
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| End bp | 1919851 |
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| Gene Length | 3819 bp |
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| Protein Length | 1272 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641664539 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001790809 |
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| Protein GI | 171058460 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000848552 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCCGC TGAACCCCCT GACGCTGCCG CTGCACGGCA GCCACCTGAT CGAGGCCAGC
GCCGGCACCG GCAAGACCTG GACGATTGCC GCGCTCTACC TGAGGCTGGT GCTCGGCCAC
GGCGAGCGCG AGAGCGTCGA CAGCCCGCTG CCGCGGCCGC TGCTGCCGGC CGAGATCCTC
GTCATGACCT TCACGCGCGC GGCCACGCGC GAGCTGTCCG ACCGCATCCG CGAGCGGCTG
ATCGAGGCGG CCCGGTGTTT CCGCGGCGAG GCCGAGCCGG CGCCGCACGA CCACTTCCTG
CGCGACCTGC GCGCCGACTA CCCCGGCGAG GCCGAGCGCC GCGACGCCGC CTACCGCCTG
GCGCTGGCCG CCGAGGGCAT GGACGACGCC GCGGTGCACA CCATCGACGC CTGGTGCCAG
CGCATGCTGC GCGAACACGC CTTCGACAGC GCCCAGCTGT TCGACGAGGA ACTCGAAGCC
GACGAAGCCG GCCGGCGCCG CCAGGCGGTG CAGGACTACT GGCGCCGCGA GGTCTACCCG
CTGCGCGGCG CGGCGCTCGA GACGGTGCTG TCGCTTTGGC CCGAGGTGGC CGAACTGCAG
TCGCAGGTGG CCGGGCTGCT GGGCAAGCTC GACCTGCTGG AGGGGGTGCC CGAGGGCCTC
GGCCTGCGCG ACTGGCTGGG CCAGATCGCG GCGCAGCGTT CACAGGAGCT GGCGCAGCTC
AAGGCCGGCT GGGTGGAACG TGCCGATTTC ATGCAGGGCT GGATCAACCA GCACCGCACT
TGCAAGCCAC CGGTTCTCGC GGGCGCCCGG CTGAAGTCCA ACAACGTGTC GGACTGGTTC
GACGCCTTGC GCGCCTGGGC AGCGGATCCG GCGCTCGAAA CCCTGGACAT GGGCAAGACC
GCCCCGACAC GCCTGACGCC CGAGGGCATC GCCGAGTGTT TCAACGACGG CTGCGCCGTG
CCGGTGCCGG CCGACTTCGC CGCCTTTGCG CAGCTGATGT TCGCGCTCGG CCAGCGCGCG
CCGCTGCACG AGCCGCTGCA GCGCCACGCC GCCTTCGGCG TCGCCCGCCG GCTGGCCGCG
CTCAAGCGCC AGGCCGGGCG TTTCGGTTAC GCCGACCTGG TCGAGCGGCT CGACGCCGCG
TTGCATGGCC CGGCCGGCGA GCGCCTCGCG CAGCGCATCC GCACGCAGTA CCCGCTGGCG
CTGATCGACG AGTTCCAGGA CACCTCGCCG CTGCAGTACC GGCTGTTCGA CCGGCTCTAC
GACGTGGCCG CGAACCGCGC CGACACCGGC CTGCTGCTGA TCGGCGATCC GAAGCAGTCG
ATCTACGGTT TCCGCGGCGC CGACATCTAC AGCTACCTGA AGGCGCGTGA GGCGACCGCC
GAGCGGCGCT ACATGCTGAC CACCAACTTC CGCTCGACGG CGGCGCTGGT GGCGGCGGTC
AACACGCTGT TCGAGCAGGC CGAGGCGGCC CGGCCCGAGG GCGCGTTCGC GCTCGGCAAG
GACGAATCGC GGGCGCTGCC GTTCGACCCG GTCGCTGCCC GTGGTCGCGG CGAGGTGCTG
GTGGCGGGCG GCGCCGCGCT GCCGGCGCTG CAGCTGGCGT GGCTGCCGGG CGCCGGGCAG
GCGCAGGTCC AGCGCCGCGA GCTGGCCGAT CACGCCGCCG CGCAGCTGGT GGCCTGGCTG
GCCGATCCGA CCTGCGGCTG GTCCGAGGGC GACGCGCCGC TGCGCCGGCT GCGGCCGAGC
GATGTCGCGG TGCTGGTGCG CGACCAGCAC GAGGCCGCGG CGATCCGGCG CGCGCTGCAG
CGGCGCGGTG TGCACTCGGT CTACCTGTCG GACAAGGACA GCGTCTACGC CAGCGCCGAA
GCCGCCGACC TGCTGCGCTG GCTGATGGCG GTGGCGCAGC CGCTCGACGG CCTGCTGGCC
CGCGCCGCCT ACGCCAACGC CAGCTGGGAC CTGGGCCTGG ACGAACTGGC CGCCCACGTG
CACGACGAAA CCGCCTGGGA CGCCCGGCTG GCGCTGCTGC AGCAGCTGCA CGGCGTCTGG
CAGCGCCAGG GCGTGCTGAC CATGCTGCGC CAGACGCTGC ACGCGCTCGA CCTGCCGGCG
CGCTGGCTGG CCGAAGGCAA CGAGGCGGCC GGCGAGCGCC GCCTGACCAA CGTGCTGCAC
CTGGGCGAGC TGCTGCAGGC CGCCAGCGCG CACCTCGAGG GCGAGGCCGG GCTGATCCGC
TGGCTGGCCG CGATGGTGCG CGGCGGCGGG GATGGCGCCC AGGGTGGCAG CGGGATGGGT
GGCTCGGCCG CAGCCGCCGG GGCAGGCGGC GACGCCCACA TCGTGCGGCT CGAAAGCGAC
GCGCAACTGG TGCAGGTGGT CACGGTACAC AAGTCCAAGG GCCTCGAATA CCCGGTCGTG
ATGCTGCCGT TCGCCAACAG CGCACGCGCC TGGCGCAAGA AGCGCCACGG CGCGCTCGAG
TGGGTGGACG ACGACGGCCG GCGCGCACTC GATTTCGCGC AGCAGCCCGA GCATGTCGCG
GCCGCCGAGC GCGAGCGTCT GCGCGAGGAC CTGCGGCTGT TCTACGTGGC GCTGACCCGC
GCCCGCCACG CGCTGTGGCT GGGCATCGGC GTGCCGCCGA CCGGCCGCAA CGGCTCGGCG
GGCCCGCTGT CGGCGCTCGG CTACCTGCTG GCCGGCGACC AAGGGCTGCG CGAGGACTCG
CTGGGCAGCG TCTTGCAGGC GCTGTGCGAC GTGAGCGACC CGCCGGCCAC GCGCAGCGTC
TGCCTCGATG TTCCCGCCCA GCGCGTGCGC TGGCGCGACG ACCGGGCACA GCCGCCGCTG
CACCTGCCGC CGGTCTTCCA GGCCGAGTTC GAGCGGCGCT GGGCGATCGG CAGCTTCTCG
GGGCTGGTGC GCGATCTGGG CGAGAGGGGG GCCGGTGCCG GCGTGCCGGC CACGCCGCAT
GGCGCGACCG ACCTGCTGCG CACCGAGCAG CTGCAGGAGG AGCTGGCGCA GATGGCGCAG
CTGACGCAGA TGGCGGCCCA GGCCGACGGG CAGCCGGCCG CGCCCTCCGG CAGCCGTGCC
GCCGCGATCG CCGGTTCCGT GCCGACGTGG CACGGGTTTC CGCGTGGCGC GTTGCCCGGC
AACTTCCTGC ACGACCAGCT TCAGTGGCTG GCCGAGGAGG GTTTCGAGCG TGCCGGCGAG
TCCGGTGTCG CAGCCGCGCT GCTGCGGCGC TGCGAGCGCG CCGGCCATGC GCAGCACGCC
GCCGGGGCGG TCGACTGGCT GCAGCAGCTG CTGGCCACGC CGCTGCCGCC GCTCGGCGCG
AGCCTGGCCG AGGTCGACCG GCTGCTGCCC GAGATGGAGT TCTGGATGCC CAGCGTCGCG
CTGCGCAGCG CCGAGCTCGA CCGCATCTGC CAGCAGCACC TGCTGCCCGG CCAGCCGCGC
CCGGCGCTGG TGTCGCGCCA GCTCGACGGC CTGCTGATGG GCTTTGCCGA CCTGGTGTTC
GAACACGGCG GACGCTGGTG GGTGCTCGAC TACAAGTCCA ACGCGCTCGG CGCCACCGAT
GCCGACTACA CGCCGGCCGC GCTGTCGCAG GCGATGCTGG CGCACCGCTA CGAGCTGCAG
GCCGCGATCT ACCTGCTGGC GCTGCACCGC CTGCTGCGCA GCCGGCTGGG CGACGACTAC
GACCCGGCAC GGCAGCTCGG CGGCGCGCTC TACCTGTTCC TGCGTGGTTT CAAGGGCCCG
GCGGCGGGCT GCGTGCACCT GAGCGCCGAG CCCGCGTGGC TGGACGCACT CGACGCCGCC
CTGTCGGCGG ATCCTTGCGC GGTGGAGAGC CAACGATGA
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| Protein sequence | MTPLNPLTLP LHGSHLIEAS AGTGKTWTIA ALYLRLVLGH GERESVDSPL PRPLLPAEIL
VMTFTRAATR ELSDRIRERL IEAARCFRGE AEPAPHDHFL RDLRADYPGE AERRDAAYRL
ALAAEGMDDA AVHTIDAWCQ RMLREHAFDS AQLFDEELEA DEAGRRRQAV QDYWRREVYP
LRGAALETVL SLWPEVAELQ SQVAGLLGKL DLLEGVPEGL GLRDWLGQIA AQRSQELAQL
KAGWVERADF MQGWINQHRT CKPPVLAGAR LKSNNVSDWF DALRAWAADP ALETLDMGKT
APTRLTPEGI AECFNDGCAV PVPADFAAFA QLMFALGQRA PLHEPLQRHA AFGVARRLAA
LKRQAGRFGY ADLVERLDAA LHGPAGERLA QRIRTQYPLA LIDEFQDTSP LQYRLFDRLY
DVAANRADTG LLLIGDPKQS IYGFRGADIY SYLKAREATA ERRYMLTTNF RSTAALVAAV
NTLFEQAEAA RPEGAFALGK DESRALPFDP VAARGRGEVL VAGGAALPAL QLAWLPGAGQ
AQVQRRELAD HAAAQLVAWL ADPTCGWSEG DAPLRRLRPS DVAVLVRDQH EAAAIRRALQ
RRGVHSVYLS DKDSVYASAE AADLLRWLMA VAQPLDGLLA RAAYANASWD LGLDELAAHV
HDETAWDARL ALLQQLHGVW QRQGVLTMLR QTLHALDLPA RWLAEGNEAA GERRLTNVLH
LGELLQAASA HLEGEAGLIR WLAAMVRGGG DGAQGGSGMG GSAAAAGAGG DAHIVRLESD
AQLVQVVTVH KSKGLEYPVV MLPFANSARA WRKKRHGALE WVDDDGRRAL DFAQQPEHVA
AAERERLRED LRLFYVALTR ARHALWLGIG VPPTGRNGSA GPLSALGYLL AGDQGLREDS
LGSVLQALCD VSDPPATRSV CLDVPAQRVR WRDDRAQPPL HLPPVFQAEF ERRWAIGSFS
GLVRDLGERG AGAGVPATPH GATDLLRTEQ LQEELAQMAQ LTQMAAQADG QPAAPSGSRA
AAIAGSVPTW HGFPRGALPG NFLHDQLQWL AEEGFERAGE SGVAAALLRR CERAGHAQHA
AGAVDWLQQL LATPLPPLGA SLAEVDRLLP EMEFWMPSVA LRSAELDRIC QQHLLPGQPR
PALVSRQLDG LLMGFADLVF EHGGRWWVLD YKSNALGATD ADYTPAALSQ AMLAHRYELQ
AAIYLLALHR LLRSRLGDDY DPARQLGGAL YLFLRGFKGP AAGCVHLSAE PAWLDALDAA
LSADPCAVES QR
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