Gene Lcho_1718 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1718 
Symbol 
ID6162812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1835474 
End bp1836142 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content73% 
IMG OID641664478 
Productmethyltransferase type 11 
Protein accessionYP_001790750 
Protein GI171058401 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0000000284846 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTCGAC TGTCCGACAA CCAGCGCTCG ATCGAACGCT ACCGCCACCA CGCCGCCGGT 
TACGACGCCT CGGCCGAGCG CACCATGCCG CTGCGGCTGC GCACCATCGC GCTGCTGGCG 
CTCAAGCCCG GCGACGTGGT GGTCGACGTC GGTGCCGGCA CCGGCCTGAG CTACGAGCCG 
CTGCTGGCGC AGGTGGGCGC CACCGGCCGG GTGCTGGCCT TCGAGCAGAG CCCCGACATG 
TTCGCCCACG CCCGCCGACG CGCCGAGCGA CTGGCCGATG CGCGGCTGTG GCACGTCAAC 
GCGCCGGCCG AGACCGTCAC GCTGCCCGAG CCGGCCGATG CGGTGCTGTT CAACTACGTG 
CACGACATCA GCCGCACGCC GGCCGCGGTC GACAACATCC TGCGCCAGGC CCGCCCCGGC 
GCCCGCATCG CGATGGCCGG CATGAAGTTC TTCCCCTGGT GGACCGGCCC GCTGAACCTG 
CTGGCCTGGC TGAAGAACCG GCCCTACAAC GCCCGGCCCG CCGACCTGTG GCAGCCGTGG 
GATCGGGTCG CGCGGCACTG CGAGCGCTTC GAGCTGCAGG CCACCCAATG GGGCATGGGC 
TACATCGCCT GCGGCGTGCT CAGGCGGGAA TCGGCCGCGG CGCCGGGCCG GCAGGGTGAG 
TCAGCGTGA
 
Protein sequence
MTRLSDNQRS IERYRHHAAG YDASAERTMP LRLRTIALLA LKPGDVVVDV GAGTGLSYEP 
LLAQVGATGR VLAFEQSPDM FAHARRRAER LADARLWHVN APAETVTLPE PADAVLFNYV 
HDISRTPAAV DNILRQARPG ARIAMAGMKF FPWWTGPLNL LAWLKNRPYN ARPADLWQPW 
DRVARHCERF ELQATQWGMG YIACGVLRRE SAAAPGRQGE SA