Gene Lcho_1714 details

Gene Information

• Locus tag: Lcho_1714
• ID: 6162239
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1831769
• End bp: 1832467
• Gene Length: 699 bp
• Protein Length: 232 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 641664474
• Product: hypothetical protein
• Protein accession: YP_001790746
• Protein GI: 171058397
• COG category: [S] Function unknown
• COG ID: [COG3009] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.00000000167749
• Fosmid Hitchhiker: No
• Fosmid clonability: decreased coverage

Sequence

Gene sequence

ATGCTCGAAC CCGGTTTCAT GACCTGCCCG CCCGATCGCC GCAAGGCCGG AACGATCGCG 
GGTCCGCCGC GCCGGCTGGC CGGGCGGATC GCCCTGCTGG TGTTCGGGCT GGTCGTGGCG 
GGCTGCGCCG GCACCTCGCC GGTGTTGCAG CAATGGCGCC TGCCGAACGC GGTGCCGGGC 
GTGGCCGCAA GCCTCGCGAC ACCTGCCGCT GCCGCCACCG TCAGCGCGCC GACTGCCGTG 
CCGGCGGTCT GGCAGCTGAT GAGCCCGCTG CAACTGCCCG ATTACCTCGA CCGCGACGCG 
CTGCTCGTGC CGCGTGGCCA GGCCGGTCTG CAGCCGCTGC CCGGCCACCG CTGGGCCGAG 
CCGCTGCGCG AGAGCGTGCC GCGCCTGCTG CTGCAGGATC TGGGCGTCCT GCGCGGCGAG 
GCGGCGGTCT GGCGTGCGCC GCTGCCGGCG GGGGTGCGCA TCGCGCGGCA GTTGCGCGTC 
GAGCTGCGGG TGTTCGAGGC CACGGCCGAC CGTTCGGCCG TCACGCTGCA GGCGCGCTGG 
TCGCTGGCCG ACCCGGCGGG TGGCACGGCC CCGCAGGTGC TGAGCACCGG CCTGCGCGTG 
CCGGTGGCGG CAGGTGATGC CGATGCCCTG GTGGCGGCCC ACCGGATCGC CTTGTGGCAG 
CTGGCCGAAC GCATCGCCGC GGGTGCGGGC TCGCGCTGA 

 

Protein sequence

MLEPGFMTCP PDRRKAGTIA GPPRRLAGRI ALLVFGLVVA GCAGTSPVLQ QWRLPNAVPG 
VAASLATPAA AATVSAPTAV PAVWQLMSPL QLPDYLDRDA LLVPRGQAGL QPLPGHRWAE 
PLRESVPRLL LQDLGVLRGE AAVWRAPLPA GVRIARQLRV ELRVFEATAD RSAVTLQARW 
SLADPAGGTA PQVLSTGLRV PVAAGDADAL VAAHRIALWQ LAERIAAGAG SR