Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1709 |
Symbol | |
ID | 6162234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1826386 |
End bp | 1828548 |
Gene Length | 2163 bp |
Protein Length | 720 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641664469 |
Product | SNARE associated Golgi protein |
Protein accession | YP_001790741 |
Protein GI | 171058392 |
COG category | [C] Energy production and conversion [S] Function unknown |
COG ID | [COG0398] Uncharacterized conserved protein [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0000000794028 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCGCCG CGCCCAGACG CGCCGTCTGG ATCGGCCTGG CCGCGTTCGC GCTGCTCACC GTGGTGCTGT ACCGGCAGTT CGATGTCGGC CAGTGGCTCA CGCTCGATGC CCTCAAGGCC AGCCGCGACG CGCTGATCGC CCGATACGAG GCCCGCCCGA TCGCCACGCT GGCGGCGTAC TTCGTGATCT ACGTCGTCGC CACCGCGCTG TCGCTGCCCG GCGCGGTGAT CCTGACGCTG GCCGGCGGCG CGCTGTTCGG GCTGGGCATC GGGCTGGTGG TGGTGTCGTT CGCGTCGAGC CTGGGCGCGC TGCTGGCCTT CCTGGCCGCG CGCTACCTGC TGCGCGACCG GCTGCAGGCG CGCTTCGGCG CGCAGCTGGC GCCGATCAAC GAAGGCATCC GGCGCGACGG CACCTTCTAC CTGCTGACGC TGCGGCTGGT GCCGGTGTTC CCGTTCGTGG TGATCAACCT GCTGGCCGGC CTGGCGCCGA TCAGCGCGGC ACGCTTCTAC GTCGTCAGCC AGATCGGCAT GCTGGTCGGC ACCGCCGTGT ACGTGAACGC CGGCACCCAG CTCGCGGGCA TCCAGACGCC GGCCGACGTG CTGTCGCCCG CGCTGCTCGG CAGCTTCGTG CTGCTGGGCG TGTTTCCGCT GATCGCCAAG TTCGTCGCCG ACGCGCTGCG GCGCCGCAAG GTCTACGCAA AGTGGCCGCG GCCCAGGTCG TTCGACCGCA ACCTGGTCGT GATCGGCGCG GGCGCGGGCG GGCTGGTGAC GGCCTACATC GCCGCGGCGG TCAAGGCGAA GGTGACGCTG GTCGAAGGCC ACAAGATGGG CGGCGACTGC CTGAACTACG GCTGCGTGCC GAGCAAGGCG CTGATCCGCT CGGCCAAGGC GATGCACCAG ATCCGCCGGG CCGAGGCGCT GGGCGTGCGC GGCGCGGCCG GCGAAGTCGA TTTCGCGGCC GTGATGGCAC GCATCCGGCG CGTGGTGCGC GACATCGAGC CGCACGATTC GGTCGAGCGC TACACCGCGC TGGGTGTCGA CGTGGTGCAG GGCCAGGCGC GCATCACCTC GCCGTGGTCG GTCGAGATCA GCACGCCGAC CGGTGTGCAG ACGCTGACCA CGCGCAGCAT CGTCATCGCC ACCGGCGCGC GGCCGTTCGT GCCGACGATC CCCGGTCTGG CCGAGGTGGG TTTTCTGACC TCGGACACGC TGTGGGGCCT GACCGAACTG CCGCGGCGCC TGCTGGTGCT GGGCGGCGGG CCGATCGGCT GCGAGCTGGC GCAGAGTTTT GCGCGGCTGG GCTCGGCGGT CACGCAGGTC GAGATGGCGC CGCAGGTGAT GGGCCGTGAA GACGCCGAGG TGTCGGCGCT GGTGGCGCAG GCCTTGCGCG CGGACGGCGT CGAACTGTTG ACCGGCCATC AGGCGATCCG CTGCGAGCAG GACGGCGGCG TCAAGCGGCT GATCGTCAGA CACGGCGATG CCGAACGCGC GATCGAGTTC GACACCCTGC TGTGCGCGGT CGGCCGCAGC CCGCGGGTCG AGGGCTTCGG GCTCGAAGAA CTGGGCATCG CGCTGACCGC ACGCAAGACC GTCGAGACCG ATGCGTATCT GCAGACGCTC TACCCCAACA TCTACGCAGT GGGCGACGTC GCCGGCCCCT ACCAGTTCAC GCACACCGCC TCGCACCAGG CCTGGTACGC GGCGGTCAAC GCGCTGTTCG GCCGCTTCAA GCGTTTCAAG GCCGACTACT CGGTGATCCC GTGGGCGACC TTCACCGATC CCGAGGTGGC GCGGGTCGGG CTGTCCGAGG CCGAGGCGCG CGAGCGTGGC ATCGCGGTCG AAGTCACGCG CTACGGCATC GACGACCTCG ATCGCGCGAT TGCCGACGGC AGCGCGCACG GTTTCGTCAA GGTGCTGACG GTGCCGGGCA AGGACCGTAT CCTGGGCGCG ACCATCGTCG GTGAACACGC CGCCGACCTG CTGGCGGAGT TTGTGCTGGC GATGAAACAC GGCCTGGGCC TGAACAAGAT CCTCGGCACC ATCCACACCT ACCCGACCCT GGCCGAGGCC AACAAGTACG CCGCCGGCAA CTGGAAGCGC GCGCATGCGC CCCAGCGGCT GCTGGCCTGG GTCGAACGAT TCCACGCCTG GGAGCGCACA TGA
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Protein sequence | MAAAPRRAVW IGLAAFALLT VVLYRQFDVG QWLTLDALKA SRDALIARYE ARPIATLAAY FVIYVVATAL SLPGAVILTL AGGALFGLGI GLVVVSFASS LGALLAFLAA RYLLRDRLQA RFGAQLAPIN EGIRRDGTFY LLTLRLVPVF PFVVINLLAG LAPISAARFY VVSQIGMLVG TAVYVNAGTQ LAGIQTPADV LSPALLGSFV LLGVFPLIAK FVADALRRRK VYAKWPRPRS FDRNLVVIGA GAGGLVTAYI AAAVKAKVTL VEGHKMGGDC LNYGCVPSKA LIRSAKAMHQ IRRAEALGVR GAAGEVDFAA VMARIRRVVR DIEPHDSVER YTALGVDVVQ GQARITSPWS VEISTPTGVQ TLTTRSIVIA TGARPFVPTI PGLAEVGFLT SDTLWGLTEL PRRLLVLGGG PIGCELAQSF ARLGSAVTQV EMAPQVMGRE DAEVSALVAQ ALRADGVELL TGHQAIRCEQ DGGVKRLIVR HGDAERAIEF DTLLCAVGRS PRVEGFGLEE LGIALTARKT VETDAYLQTL YPNIYAVGDV AGPYQFTHTA SHQAWYAAVN ALFGRFKRFK ADYSVIPWAT FTDPEVARVG LSEAEARERG IAVEVTRYGI DDLDRAIADG SAHGFVKVLT VPGKDRILGA TIVGEHAADL LAEFVLAMKH GLGLNKILGT IHTYPTLAEA NKYAAGNWKR AHAPQRLLAW VERFHAWERT
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