| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1634 |
|---|
| Symbol | |
|---|
| ID | 6163456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1737228 |
|---|
| End bp | 1737938 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641664388 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001790666 |
|---|
| Protein GI | 171058317 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0598487 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATGACA GCGCCCTCAT CGTCGAAGAC CTGGACGAAC CCCGCCTCTG GCTGGTCGAG
GTGCTGCGCC GCGCCCTGCC CGACCTGCGG CGCATCGACG CCGCGGCCGA TCTGGCGCAG
GCCGAGGCGC TGGTCAACCA GCGCCACTAC GGCCTGGCGG TGGTCGACTG GAGCCTGCCC
GACGGCACGG CGCAGGCGCT GATCGCCCGC CTGGCGCGTG TCATCCCGCC CACGCTGGTG
GTGGTGGCGA CCATCCACGA CGACGACAAC CACGTCTTCC CGGCCCTGCA GGCCGGTGCC
AGCGGCTATG TGCTGAAGTC GCAGCCGCGT GCGGTGGTCG AGGCGCAGTT GCGGCGCATC
GCGCAAGGTG AGCCGCCGCT GTCGCCGTCG ATCGCCTTGC GCGTGCTGGC GCACTTCCGC
CGCTCGCTCG ACGAGACGGC GGCCGGTGCG CAGGGTGCGA CGCCGTCATC GGCGCAGCGC
TGCGGCCCGG CATCGACACC GCAGGCCGAC GACAGCGTGC GCCTGACCGG GCGCGAAGAA
GACGTGCTGC GCATGATGGG CAAGGGCCAC AAGGCCGCCG AGATCGGCCG CCTGCTGGCC
ATCAGCGTGA ACACCGTGAA CGGCTACGTG CGCGAGGTCT ACCGCAAGCT CGGCATCTCG
AGTCGCGCCG AAGCGGCGAT CGAGGCCACC CGGCGCGGCC TGTTGCGCTA G
|
|---|
| Protein sequence | MYDSALIVED LDEPRLWLVE VLRRALPDLR RIDAAADLAQ AEALVNQRHY GLAVVDWSLP
DGTAQALIAR LARVIPPTLV VVATIHDDDN HVFPALQAGA SGYVLKSQPR AVVEAQLRRI
AQGEPPLSPS IALRVLAHFR RSLDETAAGA QGATPSSAQR CGPASTPQAD DSVRLTGREE
DVLRMMGKGH KAAEIGRLLA ISVNTVNGYV REVYRKLGIS SRAEAAIEAT RRGLLR
|
|---|
| |