| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1620 |
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| Symbol | |
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| ID | 6160491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1720502 |
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| End bp | 1722280 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664374 |
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| Product | GTP-binding signal recognition particle |
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| Protein accession | YP_001790652 |
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| Protein GI | 171058303 |
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| COG category | [N] Cell motility |
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| COG ID | [COG1419] Flagellar GTP-binding protein |
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| TIGRFAM ID | [TIGR03499] flagellar biosynthetic protein FlhF |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00835044 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGTCA AACGATTCAT CGGCCGCAAT TCGCGCGAGG CCATGCAGAA GGTGCGTCAG
GCCTTCGGTG ACAACGCCGT GGTCCTGTCG ACCAAGCCCT GCAGCGAAGG CATCGAGGTG
CTCGCCATGC CGCCCGAAAG CGTCGAGGCG ATCGAGCGTT TCGGTGAAGC CGCGATCAAC
CAGCCGTCGG CAGCGCCGCG CCAGCAGAGC GCCGCGCCGG TTGCTCCGCA GCAGCGCCCG
GCGTCCTCCA GCCTGCGCAG CCGCGCCGCC GAACAGGTGA CCCAGCCGCA GGCCGAAGAA
GCCGCGGTGC AGGAAGACGT CGGCACGCTG GCGATGAGCA CGCTGTCGTT CCAGGACTAC
GTGCGCGAGC GCATGCTCAA GAAGCGCCAG GCCGAGATCC GCGCCCAGGC CATGAAGCCG
GTGCCGGTGT CGGCCCAGGC CATCGAGCAG CGCCTGGCGC AGCGCGAGGT GCAGGAGCTG
TCGAACGACC TGCCGACCTA CCCCGACCTG ATCTCCGGCG GCCACGCGCC GCGCCAGGCC
GCCGCCGCTG CGCGCCACGC GCCGACCATG CACGAAGCGC TGCTGCAAAG CCGCAGCGCG
GCGCCCGCAC CGGCCCCTCA GCGCCCGGCA GCGCGCCCGG CGCTCGACCT GCACGACAGC
CCGCTGACCA CGCCGGCCGA GCTCGACGTG CTGCAGGGCC GCGCGCCCGG TTCCAGTTCC
GGCAGCAGCA GCCAGCGTTC TTCGCGTTCG TCGGGCAGCT CGAGAAGCGC CGCCGAAGCC
GCGCCGAGCG CGCAGCAGTC GGCCATGATG AACGAGATCC GCGCCATGAA GGGCATGATC
GAGGAGCGCT TCGGCGCACT CGCCTTCATG GAGCGGCTGC AGAAGAGCCC GAAGCAGGCG
CAGCTGACCA CCAAGCTGAT CGACTGCGGC TTCTCGCCGG CGCTGATCCG CAAGCTCGCC
GACGGCCTGA AGGACGACGT GCACGACGAG ATGGCCTGGG CCGGCGACGT GCTGCAGCGC
AACCTGCAGA CCGGCGAATC CGAGGCGCCG CTCGAAGACC AGGGCGGCGT GTTCGCGCTG
GTCGGCTCGA CCGGCGTCGG CAAGACCACC TCCACCGCCA AGCTCGCTGC CGCCTTCGCC
ACCCGCCACG GTGCCGCCAA CCTCGGCCTG ATCACGCTCG ACGCCTACCG GCTCGGCGCC
CACGAACAGC TGCGCGCCTA CGGCCGCATC CTCGGCGTGC CGGTGCACAC CGCGCACGAC
CGGGTCGCGC TCGAAGACCT GCTCGACCTG CTGCAGTCTA AGAAGATGGT GCTGATCGAC
ACCGCCGGCC TGGCGCAGCG CGATGCCCGC ACCCGCGAAC TGCTCGACAT GCTGTCGCAC
CCCTCGATCA AGCGCCTGCT GGTGGTCAAC GCCGCCGCGC AGGGCGAGAC CATCGAGGAC
GTGCTGGTGG CCTACAAGGC GACCCAGGCC AAGGGCATCG TGCTCTCCAA GATGGACGAG
GCGGTCAAGC TCGGCCCGGC GGTCGACGCG CTGATCCGCC ATCGCCTGAA GGTGGTGGCG
GTGGCCAACG GCCAGCGCGT GCCCGAAGAC TGGCACCGCC TGACCGCGCA GGCGCTGATG
CAGCGCGCGC TGCGCACCGC CGGTGCCCAG GCCTGGCGCA TGGATGCCAA CGACGTCAAC
CTGCTGTTCG CCTCGCCGCC CGCACCTCAG GCGCCGCGAC GCAGCCGCTC GTCGTCGACC
CCGACGAACA GCTCGCGCTC ATCCGGCGCC GACGCCTGA
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| Protein sequence | MNVKRFIGRN SREAMQKVRQ AFGDNAVVLS TKPCSEGIEV LAMPPESVEA IERFGEAAIN
QPSAAPRQQS AAPVAPQQRP ASSSLRSRAA EQVTQPQAEE AAVQEDVGTL AMSTLSFQDY
VRERMLKKRQ AEIRAQAMKP VPVSAQAIEQ RLAQREVQEL SNDLPTYPDL ISGGHAPRQA
AAAARHAPTM HEALLQSRSA APAPAPQRPA ARPALDLHDS PLTTPAELDV LQGRAPGSSS
GSSSQRSSRS SGSSRSAAEA APSAQQSAMM NEIRAMKGMI EERFGALAFM ERLQKSPKQA
QLTTKLIDCG FSPALIRKLA DGLKDDVHDE MAWAGDVLQR NLQTGESEAP LEDQGGVFAL
VGSTGVGKTT STAKLAAAFA TRHGAANLGL ITLDAYRLGA HEQLRAYGRI LGVPVHTAHD
RVALEDLLDL LQSKKMVLID TAGLAQRDAR TRELLDMLSH PSIKRLLVVN AAAQGETIED
VLVAYKATQA KGIVLSKMDE AVKLGPAVDA LIRHRLKVVA VANGQRVPED WHRLTAQALM
QRALRTAGAQ AWRMDANDVN LLFASPPAPQ APRRSRSSST PTNSSRSSGA DA
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