Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1606 |
Symbol | |
ID | 6162048 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1706281 |
End bp | 1707030 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641664360 |
Product | Sec-independent protein translocase, TatC subunit |
Protein accession | YP_001790638 |
Protein GI | 171058289 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00178511 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGGGCT CCGAGCAGCC CTTCGTCAGC CACCTGATCG AGTTGCGTGA CCGGCTGCTG AAAGCCGTCT ACGGCATCGG CGCCGTGTTT GCCGTGCTCG CGCTCTACCC CGGCCCGTCG CGGCTCTACG ACCTGCTCGC CAGCCCGCTG GTGGCGGCGT TGCCGCAGGG CTCGAAGATG ATCGCGGTGG GCGTCGTCTC GCCCTTCCTG ATCCCGATCA AGGTCACCGC GCTGGCCGCG CTGGGCATCT CGCTGCCCTG GGTGCTCTAT CAGGTCTGGG CCTTCGTGGC GCCGGGCCTC TACAAGCACG AGCAGCGGCT GGTGATGCCG CTGGTGGCCA CCAGCACGAT GCTGTTCTAC ACCGGCGTGG CGTTCTGCTA TTTCTTCGTC TTCGGCCAGG CCTTCCCGGC GATCCAGGCG ATGGCACCCG CGTCGGTCTC GGTGAGCCCG GACATCGAGG CCTATCTCGA CTTCGTCATC ACGATGTTCA TCGCCTTCGG CGTGGCCTTC GAGGTGCCGG TGGCGGTGGT CATCCTGGCG CGGCTCGGTG TCGTCACGCT CGATCAGCTG CGCAGCTTCC GGCGCTATTT CTGGGTGGCC GCCGCCGCCG TCTCCGGCCT CGTCACGCCG CCCGACGCGG TCTCGATGAT CGCCCTGCTG GTGCCGATGG GCCTGCTCTA CGAAGTCGGC ATCCTGGCCG CGCAGGTGTT CATCAAGCAC ACCCAGGCAC CGGCCGAGGC GAGCGAGTGA
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Protein sequence | MAGSEQPFVS HLIELRDRLL KAVYGIGAVF AVLALYPGPS RLYDLLASPL VAALPQGSKM IAVGVVSPFL IPIKVTALAA LGISLPWVLY QVWAFVAPGL YKHEQRLVMP LVATSTMLFY TGVAFCYFFV FGQAFPAIQA MAPASVSVSP DIEAYLDFVI TMFIAFGVAF EVPVAVVILA RLGVVTLDQL RSFRRYFWVA AAAVSGLVTP PDAVSMIALL VPMGLLYEVG ILAAQVFIKH TQAPAEASE
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