Gene Lcho_1548 details

Gene Information

• Locus tag: Lcho_1548
• ID: 6163522
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1642653
• End bp: 1643114
• Gene Length: 462 bp
• Protein Length: 153 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 641664303
• Product: CcmE/CycJ protein
• Protein accession: YP_001790581
• Protein GI: 171058232
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG2332] Cytochrome c-type biogenesis protein CcmE

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 0.40263
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAACCCC GTCACAAGCG CCTGGCCATC GCCGGCGGCG TGCTGGTCGC TGTGGGCGCG 
ATCGCCACCC TGGTGCTCAA CGCCTTCCAG AGCAATCTGG TGTTCTTCTA TTCGCCCAGC 
CAGGTGGTCG CCAAGGAGGT GCCCGACGGC CGCACCTTCC GCCTGGGCGG CATGGTCGAG 
GACGGCAGCG TCAAGCGCGA GGGCGTGATG GTGAGCTTTG TCGTCACCGA CACGGTGCAG 
AAGGTGCCGG TGCGCTTCGA GGGCATCCTG CCCGACCTCT TCAAGGAGGG CAAAGGCGTG 
GTCGCACAGG GCAAGGTCGA GGGCGGCACC TTCATCGCCA AGGAAGTGCT GGCCAAGCAC 
GATGAAAACT ACATGCCGCC CGAAGCCGCC GAGGCGCTCA AGCGCGCCAA GGAAGGCGGC 
CAGATGCAGA GCAGCCAGGC TGCCACCGGA GACCCGCGAT GA 

 

Protein sequence

MKPRHKRLAI AGGVLVAVGA IATLVLNAFQ SNLVFFYSPS QVVAKEVPDG RTFRLGGMVE 
DGSVKREGVM VSFVVTDTVQ KVPVRFEGIL PDLFKEGKGV VAQGKVEGGT FIAKEVLAKH 
DENYMPPEAA EALKRAKEGG QMQSSQAATG DPR