Gene Lcho_1542 details

Gene Information

• Locus tag: Lcho_1542
• ID: 6161589
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1635497
• End bp: 1637464
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641664297
• Product: cytochrome C family protein
• Protein accession: YP_001790575
• Protein GI: 171058226
• TIGRFAM ID: [TIGR01905] doubled CXXCH domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 27
• Fosmid unclonability p-value: 0.0724057
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATCGCG TGCCACCGCG GCCCGGCGCG CCCTCGCGTC CGGGGCTGAT GAAGTTGCTG 
ATGCTGATCC TGCTGCCGCT GTGGCTGCTG ATCGGCCAGC CGGCCCAGGC GCAGACCGGC 
GCCAAGGGTT TCGACCACAC CCGCACCGGC TTCATCCTCA GCGGCGTGCA CGCCAGCGAG 
CGCTGCGAGT CGTGCCACAT CAACGGCGTC TTCAAGGGCA CGCCCCGTGA CTGCACCACC 
TGCCACAGCA GCGGCGGGCG CCAGTCGCGC GGCAACACCG TCAAGTCGAG CAACCACCTG 
CCGACGACGG CGCCCTGCGA AACCTGCCAC AGCACGCAGA GCTTCAGCGG CGCGCGCTTC 
AGCCATGCCG GCGTGGCGCG TGGCACCTGC ATGACCTGCC ACAACGGCCG CACCGCGCCG 
GGCAAGAGCG TCAACCACAT CGTCACCGCC GCCTCGTGCG ACAGCTGCCA CCGCAGCAGC 
GCCTGGTTGC CGGCGGCCGG TTTCGACCAC GCCGGCGTGA CGGCCGGCAC CTGCACCAGC 
TGCCACAACG GCGCGCGTGC CACCGGGCGC TCGGCGGTGC ACGTGCCCAA CACGGCGGTC 
TCGGGCATCG GCAACGCCAG CTGCGACAGC TGCCACAAGA GCGGCTTCAA GAGCTGGCTG 
CCGGCGCGCG TGCACAGCAG CTTCAGCGTG ATCGCGCAAT GCGCCACCTG CCACACCGGC 
CGCTTTGCGC CGGCGGTCGG CAAGCCCGCC ACGCCGATCC ACGCCACCGC CACCACCTGC 
GAAAATTGCC ACAAGTCGAC CGCCAGCTGG ACCGCCGGCA CCCGCGTCGA CCACAGCACC 
TTCACGGCCG CCACCAACTG CGCGAGCTGC CACAACGGCA GCACCGCCAC CGGCAAGACG 
CCCATCCACA TCCCGACCGG CACCGCCAGT TGCGTGGCCT GCCACACCAC CACCGGCTGG 
GTGCCCAGCA GCTGGAATCA CAGCCAGGTG CTGGTGACGG GCCAGTGCGC GAGCTGCCAC 
AACGGCAGCA TGGCGAGCGG CAAGTCGGCC GGTCACATCG TCACCACCGC GTCGTGCGAC 
ACCTGCCACA AGTCGACCAC CAGCTGGACC GCCGGCACCC GGGTCGACCA CAGCACCTTC 
AACGTGGCGA CCAACTGCGC CAGCTGCCAC AACGGCAGCA CCGCCACCGG CAAGACCGCC 
ACCCACATCC CGACCGGCAC CGCCAACTGC ATCGCCTGCC ACACCACCAG CGGCTGGGTG 
CCCAGCAGCT GGAACCACAG CCAGGTGATC GTGACGGGGC AGTGCGCGAG CTGCCACAAC 
GGCAGCCTGG CGAGCGGCAA GTCGGCCGGC CACGTGGCGA CGACCGCGTC GTGCGACAGC 
TGCCACCGCG GCACCACCAG CTGGGCGAGC GCGACCTTTG CGCACTCGGC CGCCAACGCG 
GTCGGCACCG GCACCTGCGA CAGCTGCCAC AACAACGTCG GCGCCAAGGG CAAACCGGCG 
ACGCACGTTC CGGTGTCGTC GGGCGTGGCC AAGTGCGACT CGTGCCACCG CTCGCAGACG 
AGCTTTGCGG CGGCCGTGAC GATGAACCAC AGCGTCGTCA CCACCACCAC CTGCAAGACC 
TGCCACAGCG GCGCCTACGT GTCGCAGGGC ACGGTGGGGG CGCTGACCAA GCCGGGCAAC 
CACATCCCCG AGGGCATCCA GCTGCTCAAC GGCTCGACGC TCGACTGCAA CGCCTGCCAC 
ACCGGCACGG CGGTCTGGAC CAGCGTGCGC ATGAACCACA ACAACAGCCT GGGCAACGGC 
GCGGGCTGGT GCAAGGCCTG CCATCAGAGC GGCACCGCCT TCCTGGGCAA CATGGAAAAG 
AAGTCGCTCA CCCACGAACG CAGCTCGCCG CTGCCGACCG ACTGCTCGCA GTCGGGCTGC 
CACCGCCCGC TGGGCAACAA GGGCGCCGCC TACTCGAAGT GGGATTGA 

 

Protein sequence

MNRVPPRPGA PSRPGLMKLL MLILLPLWLL IGQPAQAQTG AKGFDHTRTG FILSGVHASE 
RCESCHINGV FKGTPRDCTT CHSSGGRQSR GNTVKSSNHL PTTAPCETCH STQSFSGARF 
SHAGVARGTC MTCHNGRTAP GKSVNHIVTA ASCDSCHRSS AWLPAAGFDH AGVTAGTCTS 
CHNGARATGR SAVHVPNTAV SGIGNASCDS CHKSGFKSWL PARVHSSFSV IAQCATCHTG 
RFAPAVGKPA TPIHATATTC ENCHKSTASW TAGTRVDHST FTAATNCASC HNGSTATGKT 
PIHIPTGTAS CVACHTTTGW VPSSWNHSQV LVTGQCASCH NGSMASGKSA GHIVTTASCD 
TCHKSTTSWT AGTRVDHSTF NVATNCASCH NGSTATGKTA THIPTGTANC IACHTTSGWV 
PSSWNHSQVI VTGQCASCHN GSLASGKSAG HVATTASCDS CHRGTTSWAS ATFAHSAANA 
VGTGTCDSCH NNVGAKGKPA THVPVSSGVA KCDSCHRSQT SFAAAVTMNH SVVTTTTCKT 
CHSGAYVSQG TVGALTKPGN HIPEGIQLLN GSTLDCNACH TGTAVWTSVR MNHNNSLGNG 
AGWCKACHQS GTAFLGNMEK KSLTHERSSP LPTDCSQSGC HRPLGNKGAA YSKWD