| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1532 |
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| Symbol | |
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| ID | 6161684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1621359 |
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| End bp | 1623920 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664287 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001790565 |
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| Protein GI | 171058216 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.103077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAGCA ACCTGCCTGT CAGCCAACGC GAACTGGCCC TGCCCGCGGG CATGCACATC
GCATCCCGCA CCGATGCGAA GGGTCGCATC AGCTGGGTCA ACGCCGACTT CCTCTGGGCC
AGCGGCTACA GCGAAGCCGA GCTGATCGGC CAGCCGCACA ACCTGATCCG CCACCCCGAC
ATGCCCGAGG CCGCGTTTGC CGACATGTGG GCGACGCTGC AGGCCGGCCT GCCGTGGACC
GGGCTGGTCA AGAACCGCTG CAAGAACGGC GACCACTACT GGGTGCGCGC CCACGTCACG
CCCGAATACC AGGGCGATGC GATCAGCGGC TTCCTGTCGG TGCGCACACC CGTCGGCCGC
GACGAGGTGC TGGCCATCGA GCCGATCTAC CAGTCGCTGC GCTCGGGTGC GGTCGACGGC
CACGGCCTGG TGCAGGGCCG CTGGGTCAAC CTGGCCGGCG AGGCCCGCGC CAGCCGCCGG
CGCGCCTGGC TGGGTGGCCG CAGCCTGGGC GCCCAGGCCG CGGTGGTGGC CGCAGCTGGC
GTGTCGACGC TGGCCGCCGC ACTCGCCGCC GCCTGGCTGC ACGAGCCGCT GTGGGGCCTG
GCGCCGCTGG CCGGCGCGCT GTTCACCGGC TGGGCCGGTG CACGCCTGCT GCGCCGCGTC
CGCCACACGC TGGTCGACAG CCGGGTGCAG ATCGACCGCT TCGCACAGGC CGATTTCGAC
CAGCCGCTGC CGGCGCTGGC CGGTGTCGAC GAAGCCGCCG CCCTGCCGCA CGCACTGCAG
CGCCTGCAGA CCCGGCTCGG CTTCGACTTG GCCGACGCGC AGCGCTGCGC CCGCATCGGC
GCGCGCATCA CCAGCGCGCT CGACGCCGCC GGCGCCGCCG TGCTGGTGTG CGACGAAAAC
GGCGAAGTGA CCTACGCCAA CCCGTCGCTG CGCGAACTGA TCGTCAACCT GGCGCCGCGG
GTGTGCGCCG AACTGCCGCA CTGGCCGATC GGCGAACTCG GCGCCGTCAA GCTGCCGCTG
CTGTTCACCG ACGTCGGCCG CAAGCCGCTG CTGATGCCGC TCGACCAGCT GCTCAAGCCC
CACACCCAGC GCCTCGAGAT CGCCGGCCAG ACACTCGACA TCGCCCTCAC CCCGGTGCTC
GACAACCGCG GCGCCCGCAT CGGCACCGTC ACCGAATGGC ATGACCGCAC CGCCGAACTG
GCCGCCCAGG CCGACGAACA GCGCCACCTG ACGGCCGAAC GCCAGCTGCA CGAGGAGGCG
TTGCGCATCA AGCAGGCGCT CGACGCCGCC TCGATGCCGG TGCGCATCGC CGACGCCAAC
GGCACGGTGG TCTACCTCAA CCAGGCGCTG CAGCAGATCC TGCGGCGCGA CGTGGCGGCC
TTCCGCAGCG AGCTGCCGGG CTTCGACCCC GAGCGCGTGC TGGGCGGCTC GATCGGCATG
TTCTACAAGG ATCCGCAGGC CGCGGTCGAC CGCCTGCGCA AGCTGACCGC GCGGGTGCAG
ACCCGCATGG TGCTGGGCGG CCACACCTAC GACGTCACCA CCACGCCGGT GACCGCCACC
GACGGCACGC CGCTGGGCAG CGTCGGCCAG TGGGCCGACA TGACCGACCA GCTGGCGGCC
GAAACCGCGC TCAGCGAGCT GGCGAAGGCG GCCAATGCCG GCAACTTCGG CGCCCGTTTC
GACGTGCGCG GGCGCAGCGG CTTCTACCTG CAGGTGGGCC AGATGCTCAA CGAGCTGCTG
GCTGGCGTGT CGCTCACGCT CGGCCAGGTG CGCGAGGCGG CGCAGCGGCT GTCGACCTCG
GCCGGCCACG TGACCAGCAC CTCGCAGTCG CTGGCGCAAT CGGCCTCCGA ACAGGCGGCG
AGCATGGAGG AGACCAGCGC CTCGCTGCAG GAGATCTCCA GCAGCGTCGA CCACAACTCC
GACAGCGCCC GCCAGACCGA CCAGATCGCC TCGCGCGCCG CGCAGGAAGC GCAGGAAGGC
GGCAGCGCCG TGACGCAGAC GGTCGAGGCG ATGAAGGCGA TCGCCACCCG CATCTCGATC
ATCGACGACA TCGCCTACCA GACCAATCTG CTGGCGCTCA ACGCCGCCAT CGAGGCCGCC
CGCGCCGGCG ACCACGGCAA GGGCTTCGCG GTGGTCGCCG CCGAGGTGCG CAAGCTCGCC
GAGCGCAGCC AGGTGGCGGC GCAGGAGATC AGCCAGCTGG CCGCGTCGAG CGTCGGCATG
GCCGAGCGGG CCGGCGCGCT GCTCACGCAG ATGCAGCCGT CGATCGCCCG CACCTCGACG
CTGGTGCAGG ACATCGCCAG CGCCTCGGGC GACCAGGCCC AGCAGGTCAA GCAGCTGCAC
GCGGTGATGG ACCAAGTCAG CCACTCGACG CAGATCAACG CCGCATCGGC CGAGGAGCTG
TCGGCCACCG CCGAGCAGCT CAACGACGAA GCCTCGCAGC TGGAGCACCT GGTGGCGCAG
TACCAGCTCG ATGCCGACGC ACCCGCTCAG GCCGGCGGCT TCGCGGCCGA GCCGACCCGC
TCGGCCCGCA CCCGGCAACG CGAAACCCAG TTCATCCAGT GA
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| Protein sequence | MRSNLPVSQR ELALPAGMHI ASRTDAKGRI SWVNADFLWA SGYSEAELIG QPHNLIRHPD
MPEAAFADMW ATLQAGLPWT GLVKNRCKNG DHYWVRAHVT PEYQGDAISG FLSVRTPVGR
DEVLAIEPIY QSLRSGAVDG HGLVQGRWVN LAGEARASRR RAWLGGRSLG AQAAVVAAAG
VSTLAAALAA AWLHEPLWGL APLAGALFTG WAGARLLRRV RHTLVDSRVQ IDRFAQADFD
QPLPALAGVD EAAALPHALQ RLQTRLGFDL ADAQRCARIG ARITSALDAA GAAVLVCDEN
GEVTYANPSL RELIVNLAPR VCAELPHWPI GELGAVKLPL LFTDVGRKPL LMPLDQLLKP
HTQRLEIAGQ TLDIALTPVL DNRGARIGTV TEWHDRTAEL AAQADEQRHL TAERQLHEEA
LRIKQALDAA SMPVRIADAN GTVVYLNQAL QQILRRDVAA FRSELPGFDP ERVLGGSIGM
FYKDPQAAVD RLRKLTARVQ TRMVLGGHTY DVTTTPVTAT DGTPLGSVGQ WADMTDQLAA
ETALSELAKA ANAGNFGARF DVRGRSGFYL QVGQMLNELL AGVSLTLGQV REAAQRLSTS
AGHVTSTSQS LAQSASEQAA SMEETSASLQ EISSSVDHNS DSARQTDQIA SRAAQEAQEG
GSAVTQTVEA MKAIATRISI IDDIAYQTNL LALNAAIEAA RAGDHGKGFA VVAAEVRKLA
ERSQVAAQEI SQLAASSVGM AERAGALLTQ MQPSIARTST LVQDIASASG DQAQQVKQLH
AVMDQVSHST QINAASAEEL SATAEQLNDE ASQLEHLVAQ YQLDADAPAQ AGGFAAEPTR
SARTRQRETQ FIQ
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