| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1470 |
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| Symbol | |
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| ID | 6161545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1553389 |
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| End bp | 1554399 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664224 |
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| Product | peptidase U32 |
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| Protein accession | YP_001790503 |
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| Protein GI | 171058154 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0888576 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCCCG ACACCCCGCC CCAGCTGGTG AGCCCCGCCG GCTCGCTGCG CGCCTTGCAG
ATGGCCATCG ACGCCGGTGC CGACGCGGTC TACCTGGGCC TCAAGGACGC CACCAACGCG
CGCAACTTCG CCGGCCTCAA CTTCGACGCC GCCCAGGTGC GCGAAGGCGT GCGCTACGCC
CACTCGTGCG GCCGCCAGGT GCTGATGGCG CTCAACACCT ACGCCGACGC GCGCGATGCC
ACGCCCTGGC AGCGCGCGGT CGACCGCGCC GCCGAGTTCG GCGCCGACGC GCTGATCGTG
GCCGATACCG CCGTGATGGC CTACGCCCGG CGCATCCATC CCGCGCTGCG GCTGCACCTG
TCGGTGCAGG CCTCGGCCAC CACCTACGAG GCGATCGAGT TCTACCGCGA GCGCTACGGC
ATCCGCCGCG CGGTGCTGCC GCGGGTGCTG ACGCTCTCGC AGGTACAGCA CGTGATCCGC
CACACCCCGG TCGAGATCGA GGTGTTCGGT TTCGGCAGCC TGTGCGTGAT GGTCGAGGGC
CGCTGCGCGC TGTCGTCCTA TGCCACCGGC CAGTCGCCCA ACACCGCGGG CGTGTGCTCG
CCGCCCTCGG CGGTGCAGTG GAAGGAGCGG CCCGAAGGCG TCGAGGCGCG CCTGAACGGC
GTGCTGATCG ACCGCTACGG CCCGACCGAG CCGCGTGGTT ATCCGACGCT GTGCAAGGGC
CGTTTCGACG TCGAGGGCGA ACGCGACTAC GCGCTCGAGG AACCCACCAG CCTGAACACG
GTGGAACTGC TGCCCAAGCT GATCGAGGCC GGCGTCAAGG CCATCAAGAT CGAAGGCCGC
CAGCGCAGCC CGAGCTACGT CGCCGAGGTG ACCCAGGTCT GGCGCCGGGC GATCGACCTG
GCCACGTCCA CCAGCCGCTA CGCCGTGGCA TCGGCCTGGA ACACCCAGCT CGGCCGCTGG
ACCGAAGGTT CGCAGAGCAC GCTCGGCGCC TACGACCGGC CGTGGCGTTG A
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| Protein sequence | MTPDTPPQLV SPAGSLRALQ MAIDAGADAV YLGLKDATNA RNFAGLNFDA AQVREGVRYA
HSCGRQVLMA LNTYADARDA TPWQRAVDRA AEFGADALIV ADTAVMAYAR RIHPALRLHL
SVQASATTYE AIEFYRERYG IRRAVLPRVL TLSQVQHVIR HTPVEIEVFG FGSLCVMVEG
RCALSSYATG QSPNTAGVCS PPSAVQWKER PEGVEARLNG VLIDRYGPTE PRGYPTLCKG
RFDVEGERDY ALEEPTSLNT VELLPKLIEA GVKAIKIEGR QRSPSYVAEV TQVWRRAIDL
ATSTSRYAVA SAWNTQLGRW TEGSQSTLGA YDRPWR
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