| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1462 |
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| Symbol | |
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| ID | 6163316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1540934 |
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| End bp | 1542817 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664216 |
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| Product | respiratory-chain NADH dehydrogenase domain-containing protein |
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| Protein accession | YP_001790495 |
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| Protein GI | 171058146 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.185641 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGCA ACCCACGCCG CCCCAGCGTG GCACTGGAGA GCAACGAGAT GGCCCCGGTA
AAGATCGAGA CGACACCCCC TGACCGCCTG CAGGGCGACG GCATGGAGGC CCTGCTGAGA
CGCCACGGGC GCAACCCGCA CGCCCTGGTC CAGATCCTGC GCGAGGTGCA GGCCCACCAG
ACCTGGCTGC CGCGCGACAC CCTGAGCCTG CTGGCACATG AACTGGGCCT GACGCTGGCC
CACGTGGAGG GCGTGGCCAG CTTCTACCGC TTCTTCCACA TGCAGCCGGT CGGTGAGTAC
CGACTTCTGC TGAGCGACAA CATCACCGAC CGCATGCTCG GCAGCGAGGC GCTGCTGGCC
GACCTGTGCC AGCAGCTGCG CGTCGAGCCC GGCCGGATGC GCGCCGACGG CCGCGTCAGC
GTGGCACGCA GTTCGTGCAC CGGCCTGTGC GACCAGGGAC CGGCGCTGCT GGTCAACCAC
CACCACGTCA TCACCCGGCT CGACGCGCAG CGGGTGGCGC GCATCGCCGA GCTGATCGAG
GCCCGCACGC CGGTGGCGGC GTGGCCGGCC GAATGGTTCG AGGTGGTCGA CAACATCCAC
CGCGCCGATG TGCTGCTCGG CACCCCGCAG GCACCCGGCG TGGCGCTGGC GGCGGCGCTG
GCGCGGGGCT GGCAGGCGCT GCTCGACGAG GTCAAGCAGT CCAACCTGCG TGGCCGCGGC
GGCGCGGGCT ACCAGACCGG CCGCAAGTGG GAGCTGTGCC GCGAGGCGCC CGGCAACACG
CCCGACAACA CCCACTACGT CGTCTGCAAC GCCGACGAGG GCGAGCCCGG CACCTTCAAG
GACCGGGTGC TTCTGAGCCG CTACGCCGAC TCGCTGTTCG AGGGCATGAC GATCGCCGGC
TTCGCGATCG GCGCGCGCCA GGGTTTCGTC TACCTGCGCG GCGAGTACCG CTACCTGCTG
GAGCCGCTGC AGGCCGTGCT GCAGCGCCGC CGCGAAGCGA ATCTGCTCGG TGCGGCGATC
CAGGGCCGCG AGGGCTTCGA TTTCGACATC GACATCCACG TCGGCGCCGG CGCCTATGTG
TGCGGCGAAG AGTCGGCGCT GATCGAGTCG CTGGAAGGCA AACGCGGCAC GCCGCGCATC
CGCCCGCCCT ACCCGGTCGA ACACGGCTAC CTCGACGAGC CGACCATCGT CAACAACGTC
GAGACCTACT GCGCCGTCAC CCACATCGCC GTGCACGGCG CGGCCTGGTG GGCCGGCATC
GGCACGCCCA AGTCGACCGG CACCAAGATC CATTCGGTGT CGGGCGACTG CGAGCGGCCC
GGCATCTACG AATACCCGTA CGGCACCCGC ATCGGCCGCA TCCTCGAGGA CTGCGGCGCG
CGCGACACGC AGGCGGTGCA AGTCGGCGGG CCGTCGGGCG TGTGCCTGTC GGCCTTCGAG
TTCGGCCGGC GCATCGCGTT TGAAGACGTG CCGACCGCCG GCGCCTTCAT GGTGTTCGAC
CGCTCGCGCG ATATGTTCGA GGTGGCGCGC AACTTCGCCC AGTTCTTCGC CCACGAGAGC
TGCGGCTTCT GCACGCCGTG CCGCGTCGGC ACCGCGCTGG TCGTCAAGCG CATGGACAAG
CTGGCCGCCG GCCAGGGTTC GCGGCATGAC GTGGACGTGC TGTTCGAGCT CGACAAGCTG
ATGCACACGG CCACCCACTG CGGCCTGGGC GGCGCCGCCT GCAACCCGCT GCGCGACACC
ATCGCCAAGT TCCGGCCGGC CTACGAACAG CGGCTCACAT CGCTGTACTT CGAACCGGCT
TTCAGCCTCG ACGCCGAACT GTCGATCGCC CGGCAGATGA CCGGCCGCGA CGACCCCGCT
TCGCACCTGG AGATTGTGGA ATGA
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| Protein sequence | MLRNPRRPSV ALESNEMAPV KIETTPPDRL QGDGMEALLR RHGRNPHALV QILREVQAHQ
TWLPRDTLSL LAHELGLTLA HVEGVASFYR FFHMQPVGEY RLLLSDNITD RMLGSEALLA
DLCQQLRVEP GRMRADGRVS VARSSCTGLC DQGPALLVNH HHVITRLDAQ RVARIAELIE
ARTPVAAWPA EWFEVVDNIH RADVLLGTPQ APGVALAAAL ARGWQALLDE VKQSNLRGRG
GAGYQTGRKW ELCREAPGNT PDNTHYVVCN ADEGEPGTFK DRVLLSRYAD SLFEGMTIAG
FAIGARQGFV YLRGEYRYLL EPLQAVLQRR REANLLGAAI QGREGFDFDI DIHVGAGAYV
CGEESALIES LEGKRGTPRI RPPYPVEHGY LDEPTIVNNV ETYCAVTHIA VHGAAWWAGI
GTPKSTGTKI HSVSGDCERP GIYEYPYGTR IGRILEDCGA RDTQAVQVGG PSGVCLSAFE
FGRRIAFEDV PTAGAFMVFD RSRDMFEVAR NFAQFFAHES CGFCTPCRVG TALVVKRMDK
LAAGQGSRHD VDVLFELDKL MHTATHCGLG GAACNPLRDT IAKFRPAYEQ RLTSLYFEPA
FSLDAELSIA RQMTGRDDPA SHLEIVE
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