| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1392 |
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| Symbol | |
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| ID | 6160306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1477502 |
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| End bp | 1480084 |
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| Gene Length | 2583 bp |
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| Protein Length | 860 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664146 |
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| Product | hypothetical protein |
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| Protein accession | YP_001790425 |
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| Protein GI | 171058076 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1817] Uncharacterized protein conserved in archaea |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTCA CCGCCGCCAC CGATCCCAAC CCGCCGCAGC CCCTGAGCGC CAGTTCATAC
CGCGACATCC TCCACTCGAC GCTGCTGATC GGCGGTTCGA CCGCCGTGAG GGTGCTGATC
GGCATTGCCC GCACCAAGGT CATGGCGGTG CTGCTCGGCC CGGCGGGTGT CGGCCTGATG
GGGGTCTACC TGTCGATCAT CGACCTGACC CACAGCGTGG CCGGCATGGG CATCAACAAC
AGCGGCGTGC GCCAGATCGC CGAGTCGGCC GCTTCAGGCG ACGCCCTGCG GATGGCCCAG
ACCATCGTCG TGCTGCGCCG GGTCGCGGTG GCGCTGGGCA TCTTCGGGGG CCTGCTGCTG
ATCCTGCTGG CGCGGCCGAT CGCACAGGCC ACCTTCGGCA ATGACGCCCA CGCCACGGCC
GTGGCCGTGC TGTCGCTGGC GGTGTTCCTG CGGCTCGTGT CGGACGGCCA GGGGGCGCTG
ATCCAGGGCA TGCGACGCAT CGCCGACCTG GCCCGCATCA GCGTGCTGGG CGCGCTGTGC
GGCACGCTGG CCAGCATCCC GTTTGTCTAC TACCTCGGCC AGGACGGCGT GGTGCCCGCA
CTGGTGACGG TGACGGCGCT GACCGCCGCG ACCTTCTGGT GGTACAGCCA GAAGGTGCAC
ATCGAACCGT GTGTGCTGTC GCATGCGCAG ATCCGCCACG AAGCGACCGC GCTGCTCAAG
CTCGGCTTCG CCTTCATGGC CAGCGGGCTG CTGATCACGG CCGCGGCCTA CATCGTGCGG
CTGTTCGTGC TGCGCCAGGC CGGGCTGGGT GCGGCCGGCC TGTACCAGGC TGCCTGGACC
CTGGGCGGGC TCTACACCGG CTTCATCCTG CACGCCATGG GGACCGACTT CTATCCGCGC
CTGGTCGGTG TCATCACCGA CAACGGCCGC GCCAACCAGA TGGTCAACCA GCAGGCGCAG
ATCAGCCTGC TGCTGGCCGC GCCGGGCGTG ATCGCGACGC TGACCTTCGC CTCGCTCGTG
ATCGCCTTGT TCTACACCGC CGAGTTCAGC GCCGCCATCG ACGTGCTGCG CTGGATCTGC
CTGGGCATGG CGCTGCGCGT GATCACCTGG CCGATGGGCT ACATCATCGT CGCCACAAAC
CGGCAGGCGC TGTTCTTCGG CGTCGAGCTG GCCTGGACGC TCGCCAATGT CGGCCTGTCG
TGGTGGTGCG TGCAGCGCTT CGGCTTGAAC GGTGCCGGCA TCGCCTTCTT CGGCTCGTAC
GTGTTTCACG GCCTGGTGGT CTATGCGGTG GTGCGTCGCC TGACCGGCTT CCGCTGGTCA
CGCGTGAATG CACGCACCGG CCTGCTGTTC ATCAGCGCCA TCGGCCTGGT GTTCGTCGGT
TTCCAGCTCC TGCCGCCGAT GTGGGCCATC GGCATGGGCA CGCTGGCGAT GCTCGTCAGC
AGCGGCTACG CGCTGCAGGT GCTGCTCGTG CTGGTGCCGC CGCAACAGCT GCCCGGCCCC
CTGCGGCATC TGCGGCATCT GCGGCGCCGA GATGCGGCCA GCCAGGGTCG GGCCCGCCAG
ATCTGGATCG ATCTCGACAA CTCGCCTCAC GTGCCCTTCT TCCGGCCGAT CGTCGATGAA
CTGCGTGGCC AGGGCTACAC GGTGCTGCTG ACCGCGCGCG ACGCCTTCCA GGTCACCGAC
CTGGCCCGGC TCAACCAGAT GCCCTGCATC ACCGTCGGTC GTCATTTCGG CAAGAACAAG
CTGATGAAGG CACTCGGCCT GCTGGTCCGC GCCGCCCAGC TGCTGCCGCT GATCGTGCGC
AACCGGCCCG ACCTGGCGGT GTCGCACGGC TCGCGCGCGC AGATCATGGC GGCGCGCCTG
CTGGGCATTC CGGCGGTGGT GATCGCCGAC TACGAACACG TGACCCACGT CAATCGGGCC
GACGTGATGA TCGTTCCGGA GATCATTCCG AGCGACGTGG CCGGCCGCTT CGCCGACCGG
GTGTTCAAGT ACCCGGGTAT CAAGGAGGAC GTCTACGCCG CGGCCTTCAA GCCCGATCCG
GCGATCGTCG AGGAGCTGGG CCTGGCGGCT GACAAGATCG TCGTCACCGT GCGCCCGCCC
GCGACCGAAG CGCACTACCA CAACCCCGAG AGCGAGGCGC TGTTCGCCGC CGTGATCGAG
CTGCTGGCGC AGGACGCGCG GGTGCAGGTG GTCCTGCTGC CTCGTAATCA GCGCCAGGGC
GAGCAGATCG CCCGGCAATG GCCCGAGCAT CTGGCCAGCG GCAAGATGAG CATTCCGGGC
CGGGCGGTGG ACGGCCTGAA CCTGGTCTGG CACTCCGACC TCGTCATCAG CGGCGGCGGC
ACCATGAACC GCGAAGCCGC CGCGCTGGGG GTGCCGGTCT ACAGCATCTT CCGCGGCCCC
ATCGGCGCGG TCGACCGCTA CCTGGTCGAA CAGGGCCGCC TGGTGATGCT CGAAAGCATC
GAGGACGTAC GCACGCGCAT CGACCTCACC CAACGGCACC GGGTGCCACC CGTGGCCCAT
GCCGAGCGCA GCGCGCTGCA CACCATCGTC GACCAGATCG CCCGCATCGC CCGAGGTGAA
TGA
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| Protein sequence | MPVTAATDPN PPQPLSASSY RDILHSTLLI GGSTAVRVLI GIARTKVMAV LLGPAGVGLM
GVYLSIIDLT HSVAGMGINN SGVRQIAESA ASGDALRMAQ TIVVLRRVAV ALGIFGGLLL
ILLARPIAQA TFGNDAHATA VAVLSLAVFL RLVSDGQGAL IQGMRRIADL ARISVLGALC
GTLASIPFVY YLGQDGVVPA LVTVTALTAA TFWWYSQKVH IEPCVLSHAQ IRHEATALLK
LGFAFMASGL LITAAAYIVR LFVLRQAGLG AAGLYQAAWT LGGLYTGFIL HAMGTDFYPR
LVGVITDNGR ANQMVNQQAQ ISLLLAAPGV IATLTFASLV IALFYTAEFS AAIDVLRWIC
LGMALRVITW PMGYIIVATN RQALFFGVEL AWTLANVGLS WWCVQRFGLN GAGIAFFGSY
VFHGLVVYAV VRRLTGFRWS RVNARTGLLF ISAIGLVFVG FQLLPPMWAI GMGTLAMLVS
SGYALQVLLV LVPPQQLPGP LRHLRHLRRR DAASQGRARQ IWIDLDNSPH VPFFRPIVDE
LRGQGYTVLL TARDAFQVTD LARLNQMPCI TVGRHFGKNK LMKALGLLVR AAQLLPLIVR
NRPDLAVSHG SRAQIMAARL LGIPAVVIAD YEHVTHVNRA DVMIVPEIIP SDVAGRFADR
VFKYPGIKED VYAAAFKPDP AIVEELGLAA DKIVVTVRPP ATEAHYHNPE SEALFAAVIE
LLAQDARVQV VLLPRNQRQG EQIARQWPEH LASGKMSIPG RAVDGLNLVW HSDLVISGGG
TMNREAAALG VPVYSIFRGP IGAVDRYLVE QGRLVMLESI EDVRTRIDLT QRHRVPPVAH
AERSALHTIV DQIARIARGE
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