Gene Lcho_1213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1213 
Symbol 
ID6160809 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1298536 
End bp1299696 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content65% 
IMG OID641663967 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001790247 
Protein GI171057898 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATTCG CGCTCAACGA CGAACAGAAG ATGGTGATCG ACACGGTGCG TCGATTCATC 
CATGACGAAT TGAAGCCGCT CGAGGACGAG GTCGAGGAGA CCGGCCGGCT CGACCCCGAG 
AAGGCCAAGC GGATCCACGA GAAGTCCAAG GCGCTCGGCC TCTACGCGAT GAACATCGCC 
GACGAGCTCG GCGGTGGCGG TCTGAACACG GTCGACCGCA TGCTGTGCGA GGAACAGTTC 
GGCCACACCA CCGACATCCT GATCCGGCGC GCCTTCGGCA ACGTCTACGA GGCGCTGCTG 
GCCTGCCAGG GCGAGCAGGT CGAGCGCTGG CTGAAACCCA CCGTGCGTGG CGATCGCACC 
TGCGCGATCG CGATCACCGA GTCGGGCGCG GGCTCGGATG CGCAGGGCAT CAAGACCCAC 
GCCAAGAAGA CCGACTCGGG TTGGGTGCTC AACGGCAGCA AGCACTTCAT CAGCGACGGC 
GAGTGGAGCG ACTTCTTTCT GGTCTCGGCC CGCACCGGCG AGAAGGACAT CAGCCTCTTC 
ATGGTCGACA AGGGCCTGCC CGGTTTCACC GTCGGCAAGG ACCAGAAGAT GATGGGCCTG 
CGCGGCACGC CGCACCTCGA ACTCTTCTTC GACAACGTGC CGCTGGAGCC GGTGGCGATG 
CTCGGCGAGC AGGGCCAGGG CTTCAAGATG GCGATGGGCG TGCTGGGCGT CGTGCGGCTG 
GGCCAGGTCG GCGCACGCGC GGTCGGCAAG GCCTGCCACG TGCTGGAGCT GATGACCGCC 
TACGCCAACG AGCGCCGTCA GTTCGGCCAG CGCATCGGCG ACTTCCAGCT GGTCCAGCAG 
ATGCTGGCCG ACAGCGTGAT GGAGATCAAC GCCTCGCGCC TGATGGTGCT GCACACGGCC 
GCGATGATCG ACGCCGGCAT CGATGCCCGT GACTGGATCG CGATGGTCAA GGTGCATGCC 
TCCGAGATGC TCGGTCGCGT GGTCGATCGC GGCGTGCAGC TGTTCGGCGG CATGGGCTTC 
TGCAAGGAGC TGCCGATCGA ACGTTATTAC CGCGACGCCC GTGTCTATCG CATCTTCGAC 
GGCACGTCGG AGATCCACCG CACCGTGATC GCCCGCAGCG TGCTCAAGCG CGGCGCGGCC 
TTGTTCGACA TACACCGATG A
 
Protein sequence
MTFALNDEQK MVIDTVRRFI HDELKPLEDE VEETGRLDPE KAKRIHEKSK ALGLYAMNIA 
DELGGGGLNT VDRMLCEEQF GHTTDILIRR AFGNVYEALL ACQGEQVERW LKPTVRGDRT 
CAIAITESGA GSDAQGIKTH AKKTDSGWVL NGSKHFISDG EWSDFFLVSA RTGEKDISLF 
MVDKGLPGFT VGKDQKMMGL RGTPHLELFF DNVPLEPVAM LGEQGQGFKM AMGVLGVVRL 
GQVGARAVGK ACHVLELMTA YANERRQFGQ RIGDFQLVQQ MLADSVMEIN ASRLMVLHTA 
AMIDAGIDAR DWIAMVKVHA SEMLGRVVDR GVQLFGGMGF CKELPIERYY RDARVYRIFD 
GTSEIHRTVI ARSVLKRGAA LFDIHR