Gene Lcho_1160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1160 
Symbol 
ID6164033 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1242380 
End bp1243036 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content63% 
IMG OID641663914 
ProductCRISPR-associated Cas5 family protein 
Protein accessionYP_001790194 
Protein GI171057845 
COG category 
COG ID 
TIGRFAM ID[TIGR01876] CRISPR-associated protein Cas5, Dvulg subtype
[TIGR02593] CRISPR-associated protein Cas5, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAGCT TTTGTCTCGA TGTCCGCGGC GACTACGCCT GCTTCACTCG CCCGGAGATG 
AAGGTCGAAC GCGTGTCCTA CGACTTCATC ACCCCCTCAG CCGCCCGTGC GGTGTTCGAG 
TCCATCCTGT GGAAGCCAGA GATCCGCTGG GTGGTCGAGA AGATCGAGAT CCTCGCGCCG 
GTACGCTGGA TCAGCGTGCG GCGCAATGAG GTGGGTGCGG TGGTGTCGAC CCGCAACGTA 
CAGAACGCCA TGCAAGGCGG CTCGGCCGTT TTGGGCCTTT ACGTCGAGGA GGAGCGCCAG 
CAACGCGCCG GCCTCTTCCT GCGTGACGTG GCTTATCGAT TGCACGCACG CATCGAGTCG 
GTCAAGGGCG AGGCACTGAC CAACCCGGCC AAATACGCGG ACATGTTCGG TCGTCGTGCC 
AGCAAGGGCC AGTGCGTCAA TCAGCCCTAT CTCGGTTGCC GCGAGTTCGA CGCGCGCTTT 
CGGCTGGTGA CGAACCCGAC TGGAGAGCCG GAGCCGCTTT CCAGCCTCGA CGGTGATTTC 
GGCTGGATGC TCTACGACAT GGACTTCACC CGCCCGTCCG ACCCGCGACC GATGTTCTTC 
CGCTCCCAGG TGCAACGCGG CGTAGTGGAT CTGACGCGCG CGGAGGTACG TTCATGA
 
Protein sequence
MLSFCLDVRG DYACFTRPEM KVERVSYDFI TPSAARAVFE SILWKPEIRW VVEKIEILAP 
VRWISVRRNE VGAVVSTRNV QNAMQGGSAV LGLYVEEERQ QRAGLFLRDV AYRLHARIES 
VKGEALTNPA KYADMFGRRA SKGQCVNQPY LGCREFDARF RLVTNPTGEP EPLSSLDGDF 
GWMLYDMDFT RPSDPRPMFF RSQVQRGVVD LTRAEVRS