Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1158 |
Symbol | |
ID | 6163081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1239661 |
End bp | 1240569 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641663912 |
Product | CRISPR-associated Csd2 family protein |
Protein accession | YP_001790192 |
Protein GI | 171057843 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3649] Uncharacterized protein predicted to be involved in DNA repair |
TIGRFAM ID | [TIGR01595] CRISPR-associated protein, CT1132 family [TIGR02589] CRISPR-associated protein, Csd2 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACTGA ACCACCGCTA CGACTTCGTT CTGCTCTTCG ACGTGAAGGA CGGCAACCCC AATGGCGACC CGGACGCCGG CAACCTGCCG AGGCTCGACG CCGAGACCGG ACACGGTTTG ATGACCGATG TGGCGCTCAA GCGCAAGGTG CGTAACTACG TGGGCCTCGT CCACGGAGAA CAGCCACCGC ACGAGATCTA CATCAAGGAA AAAGCCATCC TGAACAAGAC GCACGAACGC GCTTATGTTG CCGTCGGCGC GGGTGACTCG CTCAAAGGCG AGGACAAGAA GCGCAAAGGT GGCGGCGACG TCGTGGACAA AGCGCGCGAA TGGATGTGCG CCAACTTCTT CGATGTGCGG ACCTTCGGTG CAGTCATGTC CACTGGCGTG AATTGTGGTC AGGTGCGCGG CCCGGTGCAG ATGACCTTTG CCCGCTCGAT CGAGCCCATC GTCGCGCTGG AACATTCCAT CACCCGCATG GCCGTCGCCA CCGAAGCCGA GGCCGAGAAA CAAGGTGGCG ACAACCGCAC CATGGGCCGC AAGCACACCG TGCCCTACGG CCTGTATCGT TCACATGGTT TCATCTCGTC CTTCCTCGCC AGACAGACCG GCTTCTCCGA CGGCGATCTG GAACTGGTGA TGACGGCACT GAAGGACATG TTCGAACACG ACCGCTCTGC CGCACGCGGG CAGATGGCCA CCCGTGGGCT GTACGTGTTC AAACACGACA GCGAGTTGGG CAATGCTTCC GCACACAGCC TGTTCGACCG ACTGACGGTG ACACCCAATG CCCCAGGCAC GCCAGCGCGG GACTTCGGCG CCTACAGGGT GCTATTCGAT GGTCAACCGA TTGCAGAAGG CGCCAGCATG CAAGCCGCGC CTGGCGTGAC CTTGATGCGT CGCTGCTGA
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Protein sequence | MSLNHRYDFV LLFDVKDGNP NGDPDAGNLP RLDAETGHGL MTDVALKRKV RNYVGLVHGE QPPHEIYIKE KAILNKTHER AYVAVGAGDS LKGEDKKRKG GGDVVDKARE WMCANFFDVR TFGAVMSTGV NCGQVRGPVQ MTFARSIEPI VALEHSITRM AVATEAEAEK QGGDNRTMGR KHTVPYGLYR SHGFISSFLA RQTGFSDGDL ELVMTALKDM FEHDRSAARG QMATRGLYVF KHDSELGNAS AHSLFDRLTV TPNAPGTPAR DFGAYRVLFD GQPIAEGASM QAAPGVTLMR RC
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