Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1115 |
Symbol | |
ID | 6162297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1190945 |
End bp | 1191763 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641663869 |
Product | NAD-dependent epimerase/dehydratase |
Protein accession | YP_001790149 |
Protein GI | 171057800 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.452944 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCAGCC ATCCGACCCC TCTGCGATTC GACCGCCTGC TGCTGACCGG TGCCGCCGGT GGCCTGGGCC GCGAGCTGCG CACGCGCCTG AAGGCCTATT GCGACGTGCT GCGCCTGTCG GACATCAGCG ATCTCGGCGC CGCTGCCGCC GGTGAGGAGC TGATGCCCGC GCCGCTCGAG GACGCCGCCG CCGTGCACGC GCTGCTGGCC GGTGTCGACG CCGTCGTGCA CCTGGGCGGC GTGTCGACCG AGCAGCCCTG GCAGCCGATC CTGCAGGCCA ACATCATCGG CACCTACAAC CTGTACGAAG CCGCGCGCAA GCACGGCGTC AAGCGCGTCG TGTTCGCCAG CTCGAACCAC GTCACCGGCT TCTACCGGCA GGACGAGGTG GTGTCGCCGA AGGATCCGAT GCGGCCCGAC GGCCTCTACG GCCTGTCCAA GGCCTTCGGC GAGAACCTGG CGCAGTTCTA CTTCGACCGC TACGGCATCG AGACCGTCAG CGTGCGCATC GGCTCGTCCT TCCCCGAGCC GAAGAACCGT CGCATGCTGG CCACCTGGAT GAGCTTCGAC GACCTCGAGC GCCTGGTGAT GGCCGCACTC ACCGCGCCGG TGATCGGCCA CAGCGTCATC TACGGCATGG GCGACAACAC CACCACCTGG TGGGACAACA CCAGCGCCCG CCACGTCGGC TACCGGCCGC AGGACAGCTC GGAGCGCTTT CGCGCCAAGG TCGAAGCGGC CGACCCGAAA CCCGACCTGA GCGACCCGGC CGTGATCTAC CAGGGCGGCC CGTTCGTGCG CACCGGCCCG TTCGACTGA
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Protein sequence | MPSHPTPLRF DRLLLTGAAG GLGRELRTRL KAYCDVLRLS DISDLGAAAA GEELMPAPLE DAAAVHALLA GVDAVVHLGG VSTEQPWQPI LQANIIGTYN LYEAARKHGV KRVVFASSNH VTGFYRQDEV VSPKDPMRPD GLYGLSKAFG ENLAQFYFDR YGIETVSVRI GSSFPEPKNR RMLATWMSFD DLERLVMAAL TAPVIGHSVI YGMGDNTTTW WDNTSARHVG YRPQDSSERF RAKVEAADPK PDLSDPAVIY QGGPFVRTGP FD
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