| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1016 |
|---|
| Symbol | |
|---|
| ID | 6159861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1085026 |
|---|
| End bp | 1086756 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641663766 |
|---|
| Product | flagellar M-ring protein FliF |
|---|
| Protein accession | YP_001790052 |
|---|
| Protein GI | 171057703 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACG CCACCCTGCA GCCTCTGACA CCGAACACGG TTGCCGCCGA GGCACCGGCA
CCCGGTTTCG CCGCCCGTCT CGCCGGCCTG CCCCTGGGCC GCAAGCTGGC GCTGGCCGGC
GGCGTGCTGG CGCTGATCGG CCTGCTGGCG ATGGCGGTGT TCTGGAACAC CGGCAACAAC
GACAAGGTGC TGTTCGCCAA TCTGTCGGAC AAGGACGGCG GCGCCATCGT CGCCCAGCTG
ACCCAGATGA ACGTGCCCTA CAAGTTCACC GAAGGCGGCA CGGCGATCCT GGTGCCGGCC
GAGAAGGTGC ACGACGTGCG CCTGAAGCTG GCCCAGGCCG GCCTGCCCAA GGGCTCGACG
GTGGGTTTCG AACTGATGGA CAACGCCCGC TTCGGCACCA CCCAGTTCCA GGAACGCCTG
AACTTCCAGC GCGGCCTCGA GGGCGAGCTG GTGCGCTCGA TCACGGCGCT GTCGGCGGTT
GAGGCGGCGC GTGTGCACCT GGCGCTGCCG AACCAGAACG GCTTCTTCCG CGACCAGCAG
AAGCCCAGCG CCAGCGTGCT GCTGACGCTG CACCCGGGCC GCACGCTCGA CCGCGCCCAG
CTCGCCGGCA TCGTGCACCT GGTGTCGGCC AGCGTGGCCG AGCTCAACCC GAAGGCGGTC
AGCGTGCTCG ACCAGAGCGG CAGCCTGCTG GCCGGCCCGC CCGAAGGCAT GGCCGGCGCC
GCCGGCGGCA CCAACGGGCT CGACGCGCAG CAGCTGCAGT ACGTCAACCA GATCGAAACC
GTCTACACCA AGCGCATCCT CGACATCCTG GAACCCGTGC TCGGGCGCGA CAACCTGCGC
GCCCAGGTCA GTGCCGAGAT CGATTTTTCG CAGACCGAAT CGACCTCCGA AGAGTTCAAG
CCCAACCAGG GCGACGCGCC GGCCGCCGTG CGCAGCGCCC AGTCGACCGA GCAGAGCAAC
CCCGGCGCGG CCATGCCCGC CGGCGTGCCG GGCGCGCAGA GCAACCAGCC GCCCACGCCG
GCCACCGCGC CGATCAACGG CCAGGCCCAG CAGATGCAGG CCGCGCAAGG TGGCGTCGGC
AGCAACGGCA CGGCCCGGCG CGAGGCCGTC ACCAACTACG AGGTCGACAA GACCGTGCGC
GTGACACGCG CCGCCAGCGG CCAGGTCAAG CGCCTGTCGG CCGCGGTGGT GGTCAACAGC
CGCAGCGTCA CCGACAAGAA GGGCAATGTC CAGGTGGTGC CGCTGACGCC CGAAGAGCTC
GACAAGCTGA CCGCGCTGGT GCAGGAGACG GTCGGCTTCA GCAAGGACCG GGGCGACTCG
GTCAAGGTGA TCAACGCGCC GTTCAAGGTC GACAAGCCGG TCGAGGACAC CACGCCGCTG
TGGAAACAGC CCGAGGTGCA GGACATGGTG CGCACGCTCG CCCTGCCGCT GGGCCTGGCG
CTGCTGGCGC TGATCATCGT GTTCGGCGCG ATCCGTCCGG CGCTCAAGGC GGCGCAACCG
CCCGAGCCGG TGCAGCTGGT GGATGCGGTG GTCGACGACG CGCAGGAGCT GCCCGCCCTC
GAAGGCAGCG CCGAAGAGGC CGCGCACCTG GCCGCCGGTC ACATGAACGC GCTGCCGGCG
CCCGAGGACG ACGCCCAGCG CCGCCTCGAG CAGGCCCGCA AGATGGCCAA GGACAACCCC
GCGGCGGTGG CCAACATCGT GCGCGGCTGG GTCAGTGGCG CCGCGGCCTG A
|
|---|
| Protein sequence | MDNATLQPLT PNTVAAEAPA PGFAARLAGL PLGRKLALAG GVLALIGLLA MAVFWNTGNN
DKVLFANLSD KDGGAIVAQL TQMNVPYKFT EGGTAILVPA EKVHDVRLKL AQAGLPKGST
VGFELMDNAR FGTTQFQERL NFQRGLEGEL VRSITALSAV EAARVHLALP NQNGFFRDQQ
KPSASVLLTL HPGRTLDRAQ LAGIVHLVSA SVAELNPKAV SVLDQSGSLL AGPPEGMAGA
AGGTNGLDAQ QLQYVNQIET VYTKRILDIL EPVLGRDNLR AQVSAEIDFS QTESTSEEFK
PNQGDAPAAV RSAQSTEQSN PGAAMPAGVP GAQSNQPPTP ATAPINGQAQ QMQAAQGGVG
SNGTARREAV TNYEVDKTVR VTRAASGQVK RLSAAVVVNS RSVTDKKGNV QVVPLTPEEL
DKLTALVQET VGFSKDRGDS VKVINAPFKV DKPVEDTTPL WKQPEVQDMV RTLALPLGLA
LLALIIVFGA IRPALKAAQP PEPVQLVDAV VDDAQELPAL EGSAEEAAHL AAGHMNALPA
PEDDAQRRLE QARKMAKDNP AAVANIVRGW VSGAAA
|
|---|
| |