Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0990 |
Symbol | |
ID | 6162181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1058605 |
End bp | 1059642 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641663740 |
Product | inner-membrane translocator |
Protein accession | YP_001790026 |
Protein GI | 171057677 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACTTCT CGATCGCCAG CATCCTGGCA CTCGATGGTT TCACCAACGG CGCGATCTAC GCGCTGCTGG CGATGGCCAC GGTGCTGCTG TTCGCCGTGA CACGGGTGAT CTTCATCCCG CAGGGCGAGT TCGTGGCCTT CGGCGCGCTC ACGCTCGCCA TGCTGCAGAT GGGCCAGGTG CCCGGCACGG TCTGGCTTCT GCTGATCATG GCGGGGCTGG CTGCGGCGAC CGAGCTGTTC CACGGCCTGC GCCGCCGCCT GCCGGCGGCC AAGCTGGCCG GCGCGGTGCT GGCCACGCTG GCCTATCCGG TAGCGATCTC GCTGCTGGCG GGCTGGGCGG CGCCGCAGCA GCTGCCGCTG CTGCTGCAGG CGCTGCTGAC GCTGGCGATC GTCACGCCGA TGGGCTCGCT GCTGTATCGG CTGGCCTATG AATCGCTGGC CGATGCCACC GTGCTGGTGC TGCTGATCGT GTCGGTGGGC GTGCACTTCG CGCTGACCGG CCTGGGTCTG CTGTTCTTCG GCGCCGAGGG TTTCCGCAAC CCGAGCTTCT GGGACGAGCG TTTCGCCGCC GGCCCGCTGA TGCTGAGCGG CCAGACGCTG ATCATCTTCC TGGCCTCGGG CGCGCTGATC GTGATGCTGT GGCTGTTCTT CGAGCGCTCG CTGTACGGCA AGGCGCTGCG CGCCACCGCG GTGAATCGCC TGGGCGCGCG GCTGATGGGC ATCAAGACCA CCGGCGCGGG CCGGCTCAGC TTCACGATGG CGGCCTTCAT CGGCGCGCTG TCGGGCCTGC TGATCGGACC GACCACCACG ATCTTCTACG ACAGCGGTTT CCTGATCGGC CTCAAAGGCT TCGTCGCCGC GGTGTTTGCC GGGCTGTCGA GCTATCCGCT GGCGATGGTC GGCGCGCTCG GGGTGGGCGT GCTCGAGTCC TTCGGCTCGT TCTGGGCCAG TTCCTTCAAG GAGGTGATCG TGTTCACCTC GATCCTGCCG GTGCTGTTGT GGCGCAGCCT GCGCGATCCG CACACCGAGG AAGAGTGA
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Protein sequence | MDFSIASILA LDGFTNGAIY ALLAMATVLL FAVTRVIFIP QGEFVAFGAL TLAMLQMGQV PGTVWLLLIM AGLAAATELF HGLRRRLPAA KLAGAVLATL AYPVAISLLA GWAAPQQLPL LLQALLTLAI VTPMGSLLYR LAYESLADAT VLVLLIVSVG VHFALTGLGL LFFGAEGFRN PSFWDERFAA GPLMLSGQTL IIFLASGALI VMLWLFFERS LYGKALRATA VNRLGARLMG IKTTGAGRLS FTMAAFIGAL SGLLIGPTTT IFYDSGFLIG LKGFVAAVFA GLSSYPLAMV GALGVGVLES FGSFWASSFK EVIVFTSILP VLLWRSLRDP HTEEE
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