Gene Lcho_0789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0789 
Symbol 
ID6160733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp850972 
End bp851592 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content71% 
IMG OID641663539 
Productphospholipase/carboxylesterase 
Protein accessionYP_001789826 
Protein GI171057477 
COG category[R] General function prediction only 
COG ID[COG0400] Predicted esterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0528689 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGAGG CCCTGATCCT CCATCGCCCC GCCACGGCGG CCACTCAGCT GGTCCTGCTC 
TTTCACGGCG TGGGTTCCAG CCCCGAGAAT CTGGGCCCCC TGGGCCAGGC CTTGGCGGTG 
CATCGGCCGC AGGCCTGCAT CGTCAGCGTG CGCTCTCCCG ATGCATCTGA CTTCGGCTCG 
GGCTGGCAGT GGTTCTCGGT GCAGGGCGTG ACCGAGGCCA ACCGCCCGGA CCGCGTCGCC 
GCGACGATGT CGCGCTTCGT CGCCACGGTG CAGCACTGGC AGCAGGAGAC CGGCTTGAGC 
GCGGCCGCCA CGACGTTGCT GGGCTTCTCG CAGGGCGCGA TCATGGCGCT GGAGTCCACC 
CAACAACCGA CGCCGCTCGC CGCGCGCATC GTGGCGATCG CCGGCCGCTA CGCCCAGCCG 
CCGCGGGTCG CGCCTGCGTC CACGCAGGTT CACCTGATGC ACGGTGACGC TGACCCCGTG 
ATGCCCGTGC GCTTGAGCGT CGACGCGCTG GCGCAGTTGC AGGGGCTGGG TGCCCAGGCC 
ACGCTCGACC GCTTCCCCGG CCTCGGTCAT GGCATCGACA CCCGCGTGCT GGACAAGATC 
GTCGAGCGGC TTCGCGATTA G
 
Protein sequence
MQEALILHRP ATAATQLVLL FHGVGSSPEN LGPLGQALAV HRPQACIVSV RSPDASDFGS 
GWQWFSVQGV TEANRPDRVA ATMSRFVATV QHWQQETGLS AAATTLLGFS QGAIMALEST 
QQPTPLAARI VAIAGRYAQP PRVAPASTQV HLMHGDADPV MPVRLSVDAL AQLQGLGAQA 
TLDRFPGLGH GIDTRVLDKI VERLRD