Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0770 |
Symbol | |
ID | 6163687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 830105 |
End bp | 831358 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641663521 |
Product | integrase family protein |
Protein accession | YP_001789808 |
Protein GI | 171057459 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000000130395 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATACCG CTCAGCACTC GCGCGTCATC GAGGTCGATT GGCTCGCCGC CAGTCCCATC GGGCCTCACG CCGTCGCGTT CAAGCATCAC CTGACCGAGC GCAGGTACGC CGCGCACACC GTTTCCAGCT ACATCGCTGA GGTGACGCAC TTTGCGCGCT GGGTCTGCAC CCGGCGGCTG CCGCTGGCCA GGATCGACGA AGTCTCGGTC GCCATCTTCC TTGACGACCA CCTGCCGAGT TGCGCTTGCA CTGGACACAC GCGGCACGAC CGGGCCGATC ACAGCGCGGC GCTTGGGCAC CTGCTCGCCG TGCTTCGCGC GCAAGGTGCC ATTGCACAGC CACCAGTCAG CACGACGCCC GTGGATGAGG AATTGCGTCG CTACGACGAT CACATGAATC ACGTGCGTGG GCTCGCACCG AAGAGCCGGA CCATGGTGCT GAGGATCGTT GGGCGGCTGC TGGCGGAGCG CTTCGGTGGC CACGCCGTCG ATATCAAGGC CATCACGCCC GAGCACGTTC GGCGCTTCTT TGCCGAGCAG GCCGCGCTGC ACAGCAAGCC TGCCGGCGCG GGGTCTGTCG TGTCATCGCT GCGCGGCTAC TTCCGCTACC GCGCCTCGCT GGGAGATCTG GTCCACGGGT TGATCGGCGC GCTGGCCTAC CCAGCCAACT GGGCCCTGTC TTCGCTGCCC AAGAAGTTGA CCGACGAAGA AGTCGCCCAG TTGGTCGGCT CGCTCAACAA CCCCTGCCGT GCCATGCGGC GGGCGTGCGC CATCGTGCGC TGCGCCCTCG ATCTCGGGCT TCGCAGCATT GAAGTCGCCC AGCTCAGCCT GGACGACATC GACTGGCATG CCGGCACGAT CACGCTGCGC CACACCAAGG GCCGCCGTGT CGACATCCTG CCGCTGCCTG TGGCCACCGG CGAGGCCATC GCCCGGTACC TGGAACTGGA GCGCCCCAAG ACAACCAACC GCGCCATCTT CGTGCGCAAT GTGGCCCCGC GCGACGCGCC CATCGGCGCG GACCTCATCC GCATCACCAT CCGCCAGGCC TACGCGCGCG CCGGACTGCC GTACACCCGT TCGCACCTGC TGCGTCACAC GATGGCTAAC CGCTTGCTCG CCAGCGGGTC GACATTGAAG GAAGTGGCCG ACGTGCTGCG CCACCGGTCG CTGAACACCA CGATGATCTA CGCCAAGTTG GACAGCCGCA GTCTTGCTGC GGTGGCGCTG CCGTGGCCTG GGAGTGCGTC ATGA
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Protein sequence | MDTAQHSRVI EVDWLAASPI GPHAVAFKHH LTERRYAAHT VSSYIAEVTH FARWVCTRRL PLARIDEVSV AIFLDDHLPS CACTGHTRHD RADHSAALGH LLAVLRAQGA IAQPPVSTTP VDEELRRYDD HMNHVRGLAP KSRTMVLRIV GRLLAERFGG HAVDIKAITP EHVRRFFAEQ AALHSKPAGA GSVVSSLRGY FRYRASLGDL VHGLIGALAY PANWALSSLP KKLTDEEVAQ LVGSLNNPCR AMRRACAIVR CALDLGLRSI EVAQLSLDDI DWHAGTITLR HTKGRRVDIL PLPVATGEAI ARYLELERPK TTNRAIFVRN VAPRDAPIGA DLIRITIRQA YARAGLPYTR SHLLRHTMAN RLLASGSTLK EVADVLRHRS LNTTMIYAKL DSRSLAAVAL PWPGSAS
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