| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0648 |
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| Symbol | |
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| ID | 6162003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 698132 |
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| End bp | 700471 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663398 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_001789688 |
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| Protein GI | 171057339 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 77 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCATGT TTCGCTCCCA CCTGTCGCTG GCACTGGTCT CCGCCTTGAT GTGCACGACA
AGCCCGCCCG CCTGGTCACA AGGCATCAGC GGCGGGGCTC CGGCGGCCGT CGGCGGCACG
GCCATCGGCG GTGGTGTCGG TGCCGGGTCT GCGGGTGCGG CGGGCAGCGG CGCCACCCCC
GGCGCGACCA GCGTGCCCAC CATCGACAAC AGCGGCCAAC TCAGCCCCGA CGCACCGCGC
CCGGCCGAAC TGGAGGTGCG CGCCGACCCC GGCACCGGCA TCGTGCGCGT GCCGCTGGCC
ACCAACGAGT TCCAGCGCTT CGTCTACAGC GCCACCGGCC AGCAGCTGCC GGTGTTCGGC
CAGCGCTACT TCGACGAAGC CGAGCGCACC TTCGCACCGG TCGACCGCGT GCCGGTGCCG
GTCGACTACG TGCTCGGCCC CGGCGACGAG CTCTACATCC GCGCCTGGGG CAGCATCGAC
GTCGACTACC GCGCCACCCT GGACCGCAAC GGCCAGATCA ACATCCCGCG CGTGGGTTCG
ATCGGCGTGG CGGGCCTGAA GGCCGGCGAA GTCGAAGGCC ATCTGCGCAG CCAGGTCGGC
CGCGTGTTCA AGAACTTCAG CCTCAACGTC ACGCTGGGAC AGCTGCGCAG CGTGCAGGTG
TTCGTGGTCG GCCAGGCGCG CAAGCCCGGC AGCTACACCG TCAGCAGCCT GTCGACCCTC
GTCAACGTGG TGTTTGCCAG CGGCGGCCCC GGCCCGAACG GCAGCATGCG CCGCGTGCAG
CTCAAGCGCG ACGGCAAGGT GGTGAGCGAG CTCGACCTCT ACGACTTCCT GGTGCGCGGC
AGCAAGACCA GCGACGCCCG CCTGCTGCCC GGCGACGTGA TCGTGTTCAA CCCCGCCGGC
CCGCGCGTGG CCGTGACCGG CTCGCTCGAC ATCCCCGCCA TCTACGAACT CAAAGCCGGT
GGCGAGACCA TCGCCGACGT GCTGGCCTAC GGCGGCGGCA CCACCGCGTC CACCAACCTC
GCCAGCGCCC AGCTCGAACG CATCGACAGC AGCAACCCCG GCGCGCCGCG GGTGGTGTCG
ACCGTGGAAC TGGCCAGCGC CGTCGGCCAA GCCCGCCTGC GCGATGGCGA CATCCTCACC
CTGTTCGGCG TGGCGCCGCG TTTTGCCAAC GCCGTGACCC TGCGCGGCAA CGTCGCCGCA
CCGCTGCGCT ACCCCTTCAC GCCGGGCATG CGCATCAGCC AGTTGATCCC CGACCGCGAA
GCGCTGATCA CGCCTGATTA CTACGTCCGC AAGAACAAGC TGGTGCAGTT CACCGAAAGC
CGGGACGTCA GCGCCGCCAA GCTCGAACGC GACGTGCGCA ACCTGCTCGA CGAGCCGAAC
TGGGAATACG CCGCCATCGA GCGCCTGAAC ACCGACCGCG TGGCGATGGA ACTGATCCCG
TTCAACCTCG GCAAGGCCGT GATCGACCGG GACCCGGCGC ACGACCTGGT GCTGCAGCCC
GGTGACGTGA TCACCATCTT CGGCCGCGCC GACATCCGCA ACCCCGTCAG CTCGCAGACC
CGCCTGGTGC GCGTGCAGGG CGAGGTACGC GCGCCCGGCA TCTATCAGAT CCGCGCCGGC
GAAACCCTGC CGCAGCTGCT CGAACGTGTC GGTGGCGTCA CGACCGAGGC GTATGTCTTC
GGCACCGAAT TCGCGCGTGA AGAAACCCGC CGCCAGCAGC AACTGGCACT CGACGAAGCC
GTGACCCGGC TCGAGGCGCA GCTGGCCAGC GAAGCGGCGA GCACCGCCGC CAGCCTGTCG
GCCACCGACT CGCAAAGTGC GGCGGCCCTG CGCATTGCCC AGGGCGAGGC CGCCAAGGCC
CAGCTCAGGA AACTCAAGAC CATGAAGGCC AGCGGCCGCA TCTCGCTGGA GTTGCCGACC
ACCGCGTTCG GCACCGCCGA CCTGCCCGGC CTGCAGCTCG AAGACGGCGA CCGCGTCACC
ATCCCCGCCA AACCCGCCTT CGTGTTCGCG GTGGGTGCCG TGGCCAACAA CAACGCGTTG
CTGTGGAGGT CCGGCCGCAG GGTCAGCGAT TACCTGGACG TCGCCGGCGT GGACGCCGAT
GCCGATTTCG ACAACCTGTT CGTCGTGCGC GCCGACGGCA CCGTGATCCA CAGCAGCCGC
CGCGGCTGGT TCAGCAACAT CGAGAAGGTG GAAATGATGC CCGGCGACAC CCTGGTGGTG
CCTGGCAAGA CCAACCGCGA AACCTTCTGG GCCTCGTTCA CGCGCGGGCT GAAGGACTGG
AGCCAGATCT TCTATCAGTT CGGATTGAGT GCGGCGGCGA TCAAGACGCT GCGGAATTAA
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| Protein sequence | MPMFRSHLSL ALVSALMCTT SPPAWSQGIS GGAPAAVGGT AIGGGVGAGS AGAAGSGATP
GATSVPTIDN SGQLSPDAPR PAELEVRADP GTGIVRVPLA TNEFQRFVYS ATGQQLPVFG
QRYFDEAERT FAPVDRVPVP VDYVLGPGDE LYIRAWGSID VDYRATLDRN GQINIPRVGS
IGVAGLKAGE VEGHLRSQVG RVFKNFSLNV TLGQLRSVQV FVVGQARKPG SYTVSSLSTL
VNVVFASGGP GPNGSMRRVQ LKRDGKVVSE LDLYDFLVRG SKTSDARLLP GDVIVFNPAG
PRVAVTGSLD IPAIYELKAG GETIADVLAY GGGTTASTNL ASAQLERIDS SNPGAPRVVS
TVELASAVGQ ARLRDGDILT LFGVAPRFAN AVTLRGNVAA PLRYPFTPGM RISQLIPDRE
ALITPDYYVR KNKLVQFTES RDVSAAKLER DVRNLLDEPN WEYAAIERLN TDRVAMELIP
FNLGKAVIDR DPAHDLVLQP GDVITIFGRA DIRNPVSSQT RLVRVQGEVR APGIYQIRAG
ETLPQLLERV GGVTTEAYVF GTEFAREETR RQQQLALDEA VTRLEAQLAS EAASTAASLS
ATDSQSAAAL RIAQGEAAKA QLRKLKTMKA SGRISLELPT TAFGTADLPG LQLEDGDRVT
IPAKPAFVFA VGAVANNNAL LWRSGRRVSD YLDVAGVDAD ADFDNLFVVR ADGTVIHSSR
RGWFSNIEKV EMMPGDTLVV PGKTNRETFW ASFTRGLKDW SQIFYQFGLS AAAIKTLRN
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