| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0643 |
|---|
| Symbol | |
|---|
| ID | 6161907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 694396 |
|---|
| End bp | 695592 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641663393 |
|---|
| Product | lipopolysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001789683 |
|---|
| Protein GI | 171057334 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3524] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAA TTACACAACA GACAGGCGCC GATACAAAAA CTGGAAATGT CATATCTGAT
ATGAATGCCA GCGAGGAGCT TTCCCTCATC GATGTCCTGT TAATCCTCTC ACGACGCAAA
CTGCTCCTCG TCGTCGCCCC TCTGCTAGTT GGTTGCGCGG CACTCGGAAT GAGTTATCTC
GTCCGACCGA CCTACACCGC GAGCGTCCAG TTACTACCTC CGCAGCAACA ACAAAGTGGC
GCACTCACGG CACTACTAGG CGCTGCGGGC GGTATGGCAA GTGCGCTTGG CGGCATCTCC
GGTCTTAAAA ATCCGTCAGA TCAGTGGATC GGCATGCTGA AGAGTCGAGC CATCGTCGAT
GCAATTGTTA ACGAATTCAG TTTGCGTGAG ATCTACGAAG TCGAATACCA ATTCAAAGCC
CGTGAAAGGC TCGAGAAAAA CAGCCGGATT GTGGCCGGCA AAGACGGACT GATCGACATC
GAGGTTGACG ATCACGATCC TGAGCGTGCT GCGAAGATAG CGACCGCCTA TGTCGACGAA
CTCCAAAATT TAATGCGCAC CCTTGCAGTG ACGGAAGCGG CACAGCGACG CTTGTTTTTT
GAGAAACAGC TTTCCGACAC GAAGACCAAG CTCATTAAAG CCGAGATACT TTTAACGGAA
GGCGGAATCA ATACAGGGGT ATTGAAGACC AATCCCGAAG CAGCGGTCAG TCAACTCGCG
CAGGCGCAGG CAGCAGTAAC CGCCCAGGAG GTTAAGGTAT CAGTGATGCG AGAATCGATG
ACCAACAGCA ACCCTCAGTT GCGAAATGCG ATACTGGAAC TAGCATCACT ACGTGAACAA
CTTCATAGAT CCAATCGTGA CGAGCCAGAA CGCGCCAAAG GAAGCGGCGC AGAGTACGTG
ACACGGTTTC GTGATTTCAA ATATTACGAA ACCCTATTCG ACTTGTTTGC TCGTCAATAC
GAGATGGCTC GCGCAGATGA GGCTCGTGAC GGATCGGTAA TCCAGGTAAT TGATCCCGCG
CAGGTACCCG AGTACAAATC CGGCCCCAAG CGCGGCATGA TCGCAGTGCT TGCCACGATT
CTGACATTCA TACTGTCCGT GCTGTATGTA CTGGCAAGCC ACGCCCTTAG AGGCTATACG
ACGCGAGCAG ATGGCCGTCT CAAAATGGAT GCACTGAAGC AGGCCATTAT CCGCTGA
|
|---|
| Protein sequence | MSQITQQTGA DTKTGNVISD MNASEELSLI DVLLILSRRK LLLVVAPLLV GCAALGMSYL
VRPTYTASVQ LLPPQQQQSG ALTALLGAAG GMASALGGIS GLKNPSDQWI GMLKSRAIVD
AIVNEFSLRE IYEVEYQFKA RERLEKNSRI VAGKDGLIDI EVDDHDPERA AKIATAYVDE
LQNLMRTLAV TEAAQRRLFF EKQLSDTKTK LIKAEILLTE GGINTGVLKT NPEAAVSQLA
QAQAAVTAQE VKVSVMRESM TNSNPQLRNA ILELASLREQ LHRSNRDEPE RAKGSGAEYV
TRFRDFKYYE TLFDLFARQY EMARADEARD GSVIQVIDPA QVPEYKSGPK RGMIAVLATI
LTFILSVLYV LASHALRGYT TRADGRLKMD ALKQAIIR
|
|---|
| |