Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0600 |
Symbol | |
ID | 6160231 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 648471 |
End bp | 649439 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641663350 |
Product | signal peptidase I |
Protein accession | YP_001789640 |
Protein GI | 171057291 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0681] Signal peptidase I |
TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0000224318 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGAACCC TCACTGGCAT TCTGTACGCC GGCCTCGTCT TCTACGGCAT GGGCTGGTAT CTCGGCAAGT GGAGTGGCAA TTTCTCGCTG CTGCTCTTCT GCCTGACCGT CGTGACCCTG GCCTACTGGC TGGCCGAGCG CTTCCACTTC CTGCCGCGTC GGCTCGCCGC CGCTGAAAAC CTGGCCCGTC AAGACACGCT GCGGCGTGCC GACCTGCAGC GCATGGGCAT CGCCAAGGTG GATGGCGACA TCGACGAGGC GCGCCACAAG GTGCTGGCGC AACCCTGGTG GCTGGACTGG ACCGCCGGGC TGTTCCCGGT GATCCTGATG GTCTTCGTGC TGCGCTCGTT CCTGTTCGAG CCGTTCAAGA TCCCGTCGGG CTCGATGATC CCGACGCTCG AGATCGGCGA TCTCATCCTG GTCAACAAGT TCCACTACGG CGTGCGCCTG CCGGTGATCA ACAAGAAGAT CATCCCGATC AACGACCCGC AGCGCGGCGA CGTGATGGTG TTCCGCTACC CGGTCGACCC GAGCATCGAC TTCATCAAGC GGGTGGTCGG CGTGCCCGGC GACGAGATCA GCTACATCAA CCAGAAGCTC AGCCTGAACG GCAAGCCGGT GCCGCTGGAG CAGCTCGACG ACTACTACGA CGAAGACCGC CGTACCTTCT CCAAGCAGTT CCGCGCCGAT CTGGGCCCGA CCACCCACCG CCTGCTGGTC GACCCGCAGA TGCCGTCGAG CTACGCGATG CGCGGGCGCC AGTTCCCGCA GTCCGAGGCC TGCCGCTACA CCTCCGACGG CGTCACTTGC AAAGTGCCGC CGGGTCACTA CTTCATGATG GGTGACAACC GCGACAACTC CGAAGATTCG CGCTACTGGG GTTTCGTGCC GGATGAGAAC ATCGTCGGAC GGGCCTTTTT CGTCTGGATG AACTTCAGCG ACCTCAAGCG CATCGGGTTT TTCCGTTGA
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Protein sequence | MGTLTGILYA GLVFYGMGWY LGKWSGNFSL LLFCLTVVTL AYWLAERFHF LPRRLAAAEN LARQDTLRRA DLQRMGIAKV DGDIDEARHK VLAQPWWLDW TAGLFPVILM VFVLRSFLFE PFKIPSGSMI PTLEIGDLIL VNKFHYGVRL PVINKKIIPI NDPQRGDVMV FRYPVDPSID FIKRVVGVPG DEISYINQKL SLNGKPVPLE QLDDYYDEDR RTFSKQFRAD LGPTTHRLLV DPQMPSSYAM RGRQFPQSEA CRYTSDGVTC KVPPGHYFMM GDNRDNSEDS RYWGFVPDEN IVGRAFFVWM NFSDLKRIGF FR
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