Gene Lcho_0598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0598 
Symbol 
ID6160229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp647339 
End bp648025 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content69% 
IMG OID641663348 
Productribonuclease III 
Protein accessionYP_001789638 
Protein GI171057289 
COG category[K] Transcription 
COG ID[COG0571] dsRNA-specific ribonuclease 
TIGRFAM ID[TIGR02191] ribonuclease III, bacterial 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.000243515 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGTCCACCT ACCCGCTCGA CACCCTTCAG GCTCGCCTCG GTCACGTCTT CCGTGACCAG 
TCCCTGCTCT TGCGCGCGGT TTCGCACCGC AGCCACGGGG CCGACCACAA CGAGCGGCTC 
GAGTTCCTCG GTGACGCGGT GCTGAACATG ACGGTCTCCG ACCTGCTGTT CGACCAGTTC 
GACGATTCAC CCGAAGGCGA CCTGACCCGC GTGCGCGCCC ACCTGGTGCG CCAGGACATG 
CTGCATCGCC TGGCGCTGTC GCTGCAGTTG CCGGCGGTGC TGCGGCTGTC CGACGGCGAG 
GCGCGTGCCG GTGGCGCGCA GCGGCCGTCG ATCCTGGCCG ACGCCATGGA GGCGGTGATC 
GGCGCGGTCT ACCGCGACGC CGGTTATGAA GCCGCGCAGG CGCTGGTGCG ACGGCTGTTC 
GAACCGCTGG TGTCCGAAAC CGTGACGCAG GCCTGGGCCA AGGACGCCAA GACCCAATTG 
CAGGAGTGGC TCCAGGCACG TCGCCAGAGC GTGCCCGAAT ACCGCATCGA AACCACCCGC 
GGCCGCGCCC ATGACCAGAC CTTCGTGGTC GTCTGCAGCG TCGCCGGCCC GGGCATCGAA 
GCGCGTGGTG AAGGCCGTTC GCGCCGTGCC GCCGAACAGG AAGCCGCGCG CCTGGTGCTC 
GAACAACTCA GCTCGACACC CGAATGA
 
Protein sequence
MSTYPLDTLQ ARLGHVFRDQ SLLLRAVSHR SHGADHNERL EFLGDAVLNM TVSDLLFDQF 
DDSPEGDLTR VRAHLVRQDM LHRLALSLQL PAVLRLSDGE ARAGGAQRPS ILADAMEAVI 
GAVYRDAGYE AAQALVRRLF EPLVSETVTQ AWAKDAKTQL QEWLQARRQS VPEYRIETTR 
GRAHDQTFVV VCSVAGPGIE ARGEGRSRRA AEQEAARLVL EQLSSTPE