| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0592 |
|---|
| Symbol | |
|---|
| ID | 6159701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 639881 |
|---|
| End bp | 643057 |
|---|
| Gene Length | 3177 bp |
|---|
| Protein Length | 1058 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641663342 |
|---|
| Product | ribonuclease |
|---|
| Protein accession | YP_001789632 |
|---|
| Protein GI | 171057283 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0452769 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA TGCTGATCAA TGCCACGCAG CCCGAAGAGC GGCGCCTGGC GATCGTCGAT
GGCCAGAAAC TGCTCGATTT CGAGACCGAG ATCGAGGGCC GCGAACAGCG CAAGGGCAAC
ATCTACAAGG CCGTCGTCAC CCGCGTCGAG CCTTCGCTGG AGGCCTGTTT CGTCGATTAC
GGCGAAGACC GCCACGGTTT CCTGCCGTTC AAGGAAATCT CGCGCAGCTA TTTCAAGGAA
GGCGTCAGCG TCCGCGACGC CAAGATTTCC GACGTCATTT CCAACGGCCA GGAACTGCTG
GTCCAGGTCG AAAAAGAAGA GCGCGGCAAC AAGGGCGCGG CGCTGACCAC CTTCGTGTCG
CTGGCCGGCC GCTACCTGGT GCTGATGCCC AACAACCCGC GCGGCGGCGG CGTCAGCCGG
CGCATCGAGG GCGAGCAGCG CGAAGAGCTC AAGGAAAACC TCGAGCAGCT CGACTACCCC
AAGGGCATGA GCCTGATCGC GCGCACCGCC GGCATCGGCC GCAGTGCCGA AGAGCTGCAG
TGGGACCTGA ACTACATGCT CAAGCTCTGG ACCGCGATCG ACGACGCGTC CAAGGGTGGC
CGCGGTGCGT TCCTGATCTA CCAGGAGTCG TCGCTGGTGA TCCGTGCGAT CCGCGACTAC
TTCAGCGCCG ACATCGGCGA GATCCTGATC GACACCGACG ACATCTTCGA GCAGGCGCGT
CAGTTCATGC TGCACGTGAT GCCCGACACG GCCAACCGCG TGAAGCGGTA TCGCGACGAT
GCGCCGCTGT TCAGCCGCTT CCAGATCGAG CACCAGATCG AGACCGCGTT CTCGCGCACG
GTGCACCTGC CGTCGGGCGG CGCGATCGTG ATCGACCACA CCGAGGCGCT GGTCGCCGTC
GACGTCAACT CGGCGCGCGC CACCCGCGGC GGTGACATCG AGGAAACCGC CACCCGCACC
AACCTCGAAG CCGCCGACGA GATCGCGCGC CAGTGCCGCC TGCGTGACCT GGGCGGCCTG
ATCGTGGTCG ACTTCATCGA CATGGAGGAG AGCAAGAACC GCCGCGAGGT CGAGACCCGG
CTGCGCGACG CGCTGCGCAC CGACCGTGCC CGCGTGCAGT TCAGCTCGAT CAGCAAGTTC
GGCCTGCTCG AACTCAGCCG CCAGCGCCTG CGCCCGGCGC TCAGCGAAGG CAACCACATC
ACCTGCCCGC GCTGCAACGG CACCGGCCAC ATCCGCGACA CCGAATCTTC CGCGCTGCAG
ATCCTGCGCA TCATCCAGGA AGAGTCGATG AAGGAAGGCA CGGCGGCGGT CCACGTGCAG
GTGCCGGTCG AGGTGACCAG CTTCCTGCTC AACGAGAAGC GCACCGAGAT CACCAAGATC
GAGTTGAAGC AGCGCACCAC CGTGCTGCTG GTGCCCAACA AGCACCTCGA GACGCCCAAC
TACAAGCTCG AACGCCTGCG CCACGACGAT CCGCGGCTGG AGAACATCCA GGCCAGCTAC
ACGATGATCG AGGAGCCGGA AGACGAAGTC GGCATCACCC GTCGCGAGAA GCTCAAGGCC
AAGCAGGAGC CGCTGATCAA GGGCGTGCTG CCCGATCAGC CCGCGCCGGT GGCCGCGCCC
AAGCCCGAGC CGGCGCCCGC GCCCGCACCG GTGGCCGTGG CTCGGCCCGC ACCCGTTGCC
GCGCCGGTCG CTGCCCCGGC CGCGCCGGCC GAAGGGGGTT TCTTCGGCTG GATCAAGAAG
CTGTTCGGCG GTGGCGCGGC TGCGCCGGTC GTGGTCGCTC CCGAGCCCGT CGCGCCCCCG
GTCGTCGCCA AGGAGACCAC CGGTTCGCGC GGTGAGCGCA CCGAAAAGGG CGAGCGTGGC
GATCGCCGCG GTGGCCGTCG TGACGGCGCC GAGCGGGGTG GCGAGCGCAA CGGCAGCGGG
GCCGAGCGTG GCGAGCGCGG TGGCCGTCGC GGTGAACGCA ATGGCGAGCG TGGCGCTGAA
CGCGGTGCCG AGCGCCAGGA AGCGCGCGCC GAGGCGATCA AGCCCGAAGC GCGTGAGGGC
CGCGAGAACC GCGAACCGCG CGAACCGCGC GAAGCCCGTG AGCCGCGCGA AGCCGGCGGC
GAGCGTCGCC CGCGTGGCGA GTCGCGGGGT GAATCTCGTG GCGAATCACG CGGCAATGGC
GAGCGCCGCG AGCGCAACGT CGAGGTCGTC GCGGGCGAGG GTGATGCCCC CGCCACGCAG
CGCCCGCCGC GTGGTGAACG TCGTCCCGCT CCGGCGCCCG TCGCCGCTGT GGCCGAGGTC
GACACCAGCA ACCTGGCCGA AGCGGCCAAC AGCGGTTTCG AGGAAACCCA GCCCGGTTCG
ACCGACGGCA GCGACGCGGC CAACGCCGAG CGCGACGGCC GCCGTCGCCG CCGTGGTGGT
CGAGGTGGCC GCCGTGACCG CGAAGAGCAG CGTCCGGAAG GCGCCGAAGG CCTGAGCACC
GACGCCGTGG CACAGCCCGT CGCGGCTGCG GCTGATGCGC CGGTCGCCGT CGAAGGTGCT
GTCGGCGTGT CGACCCAGGA CGAAAGCGCC GCCGCACCGG TCGACGCCGA GTCGGCCGAG
GCCCAGCGCG ACGGCCGCCG CCGTCGCCGC GGCCGTGGTC GTGGCCGTGA CGGTGTCGAG
GGTGCTGACG CAACCGAAGC CGCCGAAGGC GCTGAAGTGG TCAGCGGCGT CACCGCCGCC
GAGTTCAGCG AGGAGTTGCC TGCGCAAGCC GCGGTCGCTG CGCAAGCCGT GGTCGCCGAG
CCGGTCGTTC AGATGGCGGT TCAGCCCGTG GCCGAGCCTG TTGCCGAGGT GCCCCCCGTG
GCTGCTCCGG TGATCGCTGC GCCGGTCGTG CAACCGCCGG CGGCCGTGGT GATCGAGGCC
CAGCCCGTGC CGGCGGCTTC GTTCGAGCCC GCGCCGACGG TGGTCGTCAA GCCCTATGCG
CTGCCGCTCG ACACGCTGGC CGAGATCGCA CGCGGTGCCG GCCTGGAGTG GGTCAACAGC
AACGCCGACA AGGTGCGCCA GGTTCAGGAG GCGATCGCCA ACGAACCCAA GCCGGTGCGT
GTGCCGCGCG AGATCAAGCC GGTGGTGCTG GTCGACGACG GCCCGCTGGT GCTGGTCGAG
ACCCGCCGCA ACCTCGGCCA GGTGCAGCTG CCGTTCGAGA CCGGTTCGAC GCACTGA
|
|---|
| Protein sequence | MKRMLINATQ PEERRLAIVD GQKLLDFETE IEGREQRKGN IYKAVVTRVE PSLEACFVDY
GEDRHGFLPF KEISRSYFKE GVSVRDAKIS DVISNGQELL VQVEKEERGN KGAALTTFVS
LAGRYLVLMP NNPRGGGVSR RIEGEQREEL KENLEQLDYP KGMSLIARTA GIGRSAEELQ
WDLNYMLKLW TAIDDASKGG RGAFLIYQES SLVIRAIRDY FSADIGEILI DTDDIFEQAR
QFMLHVMPDT ANRVKRYRDD APLFSRFQIE HQIETAFSRT VHLPSGGAIV IDHTEALVAV
DVNSARATRG GDIEETATRT NLEAADEIAR QCRLRDLGGL IVVDFIDMEE SKNRREVETR
LRDALRTDRA RVQFSSISKF GLLELSRQRL RPALSEGNHI TCPRCNGTGH IRDTESSALQ
ILRIIQEESM KEGTAAVHVQ VPVEVTSFLL NEKRTEITKI ELKQRTTVLL VPNKHLETPN
YKLERLRHDD PRLENIQASY TMIEEPEDEV GITRREKLKA KQEPLIKGVL PDQPAPVAAP
KPEPAPAPAP VAVARPAPVA APVAAPAAPA EGGFFGWIKK LFGGGAAAPV VVAPEPVAPP
VVAKETTGSR GERTEKGERG DRRGGRRDGA ERGGERNGSG AERGERGGRR GERNGERGAE
RGAERQEARA EAIKPEAREG RENREPREPR EAREPREAGG ERRPRGESRG ESRGESRGNG
ERRERNVEVV AGEGDAPATQ RPPRGERRPA PAPVAAVAEV DTSNLAEAAN SGFEETQPGS
TDGSDAANAE RDGRRRRRGG RGGRRDREEQ RPEGAEGLST DAVAQPVAAA ADAPVAVEGA
VGVSTQDESA AAPVDAESAE AQRDGRRRRR GRGRGRDGVE GADATEAAEG AEVVSGVTAA
EFSEELPAQA AVAAQAVVAE PVVQMAVQPV AEPVAEVPPV AAPVIAAPVV QPPAAVVIEA
QPVPAASFEP APTVVVKPYA LPLDTLAEIA RGAGLEWVNS NADKVRQVQE AIANEPKPVR
VPREIKPVVL VDDGPLVLVE TRRNLGQVQL PFETGSTH
|
|---|
| |