| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0486 |
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| Symbol | |
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| ID | 6162092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 525113 |
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| End bp | 526558 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641663235 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001789526 |
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| Protein GI | 171057177 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0457] FOG: TPR repeat |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCGC TGACGGCCGC GGTCAATGCA TTGAATGTGG CGGTCACCCT GGAGCCACGA
CTCGCGGATG CCTGGTATCG ACTGGGCGAA ACGCTGCTGC GCCAGGATCA CTACGAAGAA
GCCCTGACCG CGCTGCTGGC CTGCGTCGAT GTCACCCCGA ACGAGCCTTT GCGAGCCAAG
GCGCAATTCC ACATCGGACA ATGCCACTTT GCGCTCAACC GGATCGAACT TGCCCGCGAC
GCCTTTCAGG CCAGCCTGAA CGGATCCGCC AGCGCCGATG CACTCACCGG ACTGGGCCAC
GCCTATCTGC GCCTAGATCA GGATACACGA GCCATCACGG CGTACGAAGA GGCGCTGCAC
TCGCTCGAGA ACCCATCCAA CATCCTGCTT CTCAACTTGG GCTGCGCTTA CCAGCACGCG
GGCAACTACG CGGGCGCTCG CGAGGTATTC CAGAAGGTGA TCACACGATC CCCGAGCGAC
CACCATGCGC GCTGGTACCT GTGCCAGCTC GATCTACTTG AATGCAGATG GGAGCAGGGA
TGGGCAAATT ATTCAGCCCG TTTTGCAGCA GGCGCCTCGC CGTTCCGACC GATGCCGTTC
CGGCGCTGGA ACGGCCGACC ATCGCCTGAA GACACGCTGC TGGTGCTGGC CGACGAAGGG
CTCGGCGATG AGATCATGTT CGCCTCCTGC ACCCCTGATC TGTCCAGTCG GATGGGGCAT
GTCATCCTGG AGTGTGACCC CCGACTGGGT CGGCTGTTCC AGCGTTCGTT TCCTCAGGTT
GAAGTCATCG CCACCCAGCG ACGCAACCAA GCTGACTGGC TGTCGGGCTG CCGGACGCCG
CAGTGGCAAA TTCCGTCGGG CGACCTTCCG TCTTTTTTTC GCAATCGCGA CGAGGATTTC
CCGCGTCACA GCGGCTTTCT GAAAGCCGAT CCTGAACGGG TAACGGCATG GACCGAACGC
CTCGACCGGT CGATCGGAGC GGGACTCAAG GTCGGCTTGT CCTGGCGGGG CGGCACCGAT
CGGACCCGAA TCCGTGCACG CACCATCCAG CCCGAGACGT GGGGACCGAT CCTGAACGTG
CCCGATGTGC ACTTCGTCAA TCTTCAGTAC GGCAACTACT CGCCCGAACT GACTCAGCTC
GAGCAACTGC ATGGCGTACG CATCCATGAT TTTCCCGAGG CCCATGTCGA CTACGACGAA
ACGGCCGCAC TGGTCTGCTC ACTGGATCTG GTGATCACCG TCTGCACGGC TGTCGCCCAC
CTGAGCGGCG CCATCGGCAA GGAAGTATGG GTACTGACAC CACACGCTCC CGGCTGGCGC
TACACCGCCG GTCGAAACAG CATGCCCTGG TATCCCAGCT CCCGGATCTT CCGACAACCT
GCGCCGGGCG ACTGGGCACA AACGTGTCGA GAATTGGCAC TCGCACTGAA AGCCCTGACA
AATTAG
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| Protein sequence | MSALTAAVNA LNVAVTLEPR LADAWYRLGE TLLRQDHYEE ALTALLACVD VTPNEPLRAK
AQFHIGQCHF ALNRIELARD AFQASLNGSA SADALTGLGH AYLRLDQDTR AITAYEEALH
SLENPSNILL LNLGCAYQHA GNYAGAREVF QKVITRSPSD HHARWYLCQL DLLECRWEQG
WANYSARFAA GASPFRPMPF RRWNGRPSPE DTLLVLADEG LGDEIMFASC TPDLSSRMGH
VILECDPRLG RLFQRSFPQV EVIATQRRNQ ADWLSGCRTP QWQIPSGDLP SFFRNRDEDF
PRHSGFLKAD PERVTAWTER LDRSIGAGLK VGLSWRGGTD RTRIRARTIQ PETWGPILNV
PDVHFVNLQY GNYSPELTQL EQLHGVRIHD FPEAHVDYDE TAALVCSLDL VITVCTAVAH
LSGAIGKEVW VLTPHAPGWR YTAGRNSMPW YPSSRIFRQP APGDWAQTCR ELALALKALT
N
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