Gene Lcho_0300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0300 
Symbol 
ID6161497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp317338 
End bp317943 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content71% 
IMG OID641663044 
Productsugar transferase 
Protein accessionYP_001789340 
Protein GI171056991 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2148] Sugar transferases involved in lipopolysaccharide synthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones82 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTCAAAC GCCTGTTCGA TCTGGCCGTG GCCAGCCTCG CGCTGCTGCT GCTCGCACCG 
CTGCTGGCGG GCGTGGCGAT CGCGGTCAAG CTCGATACAC CCGGGCCGGT GTTCTACCGC 
CAGGTGCGGG TGGGGCGCGG CGGGCGCGAG TTCCGCATCC ACAAGTTCCG CACCATGACG 
CACGACCCGG CCGACCGCGG CCCGCAGCTG ACGGTGGGCG CCGATGCGCG CATCACCCGC 
GTGGGCGCCT TCCTGCGGCA CAGCAAGTGG GACGAGCTGG CGCAGCTGAT CGACGTCTGG 
CGCGGCGACA TGAGCATCGT CGGCCCGCGC CCGGAGGTGC CGCGTTACGT GGCGCTGTAT 
CCGGCGGACT TGCGTGAGCA GGTGCTGTCG GTGCGTCCGG GCATCACCGA CGACTGCTCG 
CTCGATTTCC GCGACGAGGG CACGCTGCTG GCGCAATCGG CCGACCCCGA GCGCACGTAT 
GTGGATCAGA TCCTGCCGAT CAAGCTGCGG CTGCAGGCGC GGTACGTGGC GCAGGCGGGG 
GTGCGGACTG ACTTGCGCAT CCTGGCGCGC ACCTTCGCCG TGCTGGCCGG CCGGGTGACG 
CGGTGA
 
Protein sequence
MVKRLFDLAV ASLALLLLAP LLAGVAIAVK LDTPGPVFYR QVRVGRGGRE FRIHKFRTMT 
HDPADRGPQL TVGADARITR VGAFLRHSKW DELAQLIDVW RGDMSIVGPR PEVPRYVALY 
PADLREQVLS VRPGITDDCS LDFRDEGTLL AQSADPERTY VDQILPIKLR LQARYVAQAG 
VRTDLRILAR TFAVLAGRVT R