Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0144 |
Symbol | |
ID | 6163745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 147928 |
End bp | 151071 |
Gene Length | 3144 bp |
Protein Length | 1047 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641662888 |
Product | CzcA family heavy metal efflux protein |
Protein accession | YP_001789184 |
Protein GI | 171056835 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAATT GGATCGTCCG ATACAGCCTG CACAACCGGC TGCTCGTCCT CGCATTCGCC GCCATCCTGA TGGTCTACGG GGCCATGACG GCTCTGCGCA CGCCGGTGGA CGTGTTTCCC GACCTCAACA AGCCGCTCGT CACCGTGCTG ACCGAAGCCG GCGGCATGGC GCCCGAGGAG GTCGAGCAAC TGGTGACCTT CCCGCTCGAA ACCGCGCTCA ACGGCATGCC CGGCGTGACG CGGGTGCGCT CGACCTCCGG CGTGGGCCTG GCGGTGGTCT ACGCCGAGTT CGACTGGGGC ACCGACATCT ACCGCAACCG CCAGCTGGTC GCCGAACGGC TGGCGCTGGT GCGCGAGCAG TTGCCCGCCG GCATCAACCC GTCGATGGGG CCGGTGTCGT CGATCATGGG CGAGGTCATG CTGCTGGCCC TGCCGCTCGA TGGTGGCAAG GATGGCGCGC GGGCCACGCC GATGCAGGCG CGCGAGTACG CCGACTTCGT GCTGCGCCCG CGGCTGCTGT CCATCCCCGG GGTGTCGCAG GTGATCCCGA TCGGCGGCGA CGTGCGGCAG TTGCGGGTCG AACCCGACAC GGCGCGCATG GCGCAGTTCG GTGTTTCCCT GAGCCAGATC GAGAGCGCGC TGCAGGGTTT CTCGTCCAAC GCCGGCGGCG GGTTCATCGA CCTGAACAGC CGCGAATACC TGATCCGCCA CATCGGCCGT ACCAACCGGG TGGAGGACCT GCAAGGCCTG GCGGTGGCCT GGTCCGGCGG GCGCGCGATC CTGCTGGAGC AGGTCGCCAG CGTGCGCTAC GCCGCCGGCC AGAAGCGCGG CGACGGCGGC TACAACGGCG TGCCGGCGGT GGTGGTGAGC ATCCAGAAAC AGCCCGCGGC CGACACCGTG CGCCTCACCC GCGACATCGA GTCGGCGCTG GACGAACTCA AGCAGGGCCG GCCCGCCGGC CTGAGCGAGC CGCGCGTGCT GTTCCGGCAG GCCGACTTCA TCCTGGCCTC GGTGGGCAAC GTCAGCGAGG CGCTGCGGGA CGGGGCGGTG ATGGTCGCCA TCGTGCTGTT CGCCTTCCTG CTGTCGGCGC GCACCACGCT GATCTCGCTG GTCGCGATTC CGCTGTCGCT GGCGGTCACG GCGCTGATCC TCAAGCTGAT GGGGCAGTCC ATCAACGTGA TGACGCTGGG CGGTCTGGCG ATCGCCATCG GCGAGCTGGT CGACGATGCG GTGGTGGACG TCGAGAACAT CCTGCGCCGC CTGAAGCAGA ACCGCGCGCT GGCCCGGCCG CTGCCGCTGC TCGAAGTGGT GCGCCAGGCC AGCGTCGAGG TCCGCTCGGG CATCGTCTAC GCCACCATCA TCGTGGCGCT GGTGTTCGTG CCGCTGTTCG CGCTGCCGGG CATCGAGGGC CGGCTGTTCA CGCCGCTGGG CATCGCCTAC ATCGTCTCGA TCCTGGCGTC GATGTTCGTG TCGATGACGG TCACGCCGGT GCTGTGTTCC TACCTGCTGC CGCGCATGAA ACGCCTCGGC CACGGCGACA GCCCGGTGGT GGCGCGTCTG AAGCGCCTGG ACGAGCGGCT GCTGAACTGG TCGTTCGCGC GCGCCCGGCT GCTGATGAGC CTGGCGGTGA TGGCGGTGGT GGTGGCCGCC ACCACCGTGC CCTACTTCCC GCGTGCCTTC CTGCCGCCGT TCAACGAGGG CTCGCTGGTG CTGGGCATGG TGTTCAACCC GGGCACCTCG CTGGCCGAGG CGAACCGGAT GGGCTCATTG GCCGAGACGC TCATCCAGGA GGTGCCCGAG GTCACCCAGG TCGGCCGTCG CACCGGTCGT GCCGAGCTCG ACGAACACGC CGAAGGTGTG CACTCGGCCG AGATCGACGT CGACCTCAAA CGCAGCGATC GCAACCGCGA ACAGATCATG GCGCACCTGC GCGCCAAGCT CGCGGTGCTG CCGGCGCAGG TCGCCATCGG CCAGCCGATC TCGCACCGCC TCGACCACCT GCTGTCGGGC GTGCGGGCGC AGATCGCGCT GAAGGTGTTC GGCGACGACA CCGACACGCT ACGCGGTCTG GCCGAGCAGT TGCGGCAAGG TCTGGTCAGC GTGCCAGGCC TGGTCGACCT GACGGTCGAG AAGCAGGTGC TGATCCCGCA GATCACCGTG CGGATCGATC ACCGCAAGGC GGCCCAGGCG GGCCTGTCGC CGGGTGAGGC GATCCGGGTG CTGCAGGCGC TGACGGACGG CGCGCACGGC GCCCAGATCG TCGACGGCGC GCGCCGCTAC GACCTGGTGC TGCGCCTGCC CGACGCGGCG CGCAGCCCGC AGGACCTGGC CCGCACGCTG ATCGACACGC CCGCGGGCCG GCTGCCGGTA TCGGCCATCG CCAGCGTCGA GGAGAACGAC GGCCCGAACC AGATCGGGCG CGAGAACGGC CGGCGCCGCA TCGTCGTCTA CGCCAACACC GACGGCTCGG ACATGAGCCG CATCGTGGCC GACGTGCGGG CCGTGATCGC CAGCACCCCC ATGCCGCAGG CCACCTTCGT CAGCCTGGAG GGTCAGTTCC AGGCCCAGGA GCAGGCCACG CAGCTGATCG TCGGGCTGTC GCTGGTGTCG CTGCTGCTGG TCGCGCTGGT GCTGTACTCG CGCTACAAGT CGATGGTGCT GGCGGGCATC ATCATGGCCA ACATCCCGCT GGCCTTGATC GGCAGCGTGG TGGCGATGTG GATCGCCGGG GTCAGCCTGT CGGTGGCCTC GATGGTGGGC TTCATCACGC TGGCGGGCAT CTCGACGCGC AACGGCATCC TGAAGGTCAG CCACTACGTC AACCTGTGCC GGCTCGAAGG GGAGCAGTTC GGCCCGGCGA TGGTGGTGCG CGGCTCGCTG GAGCGGCTCA CGCCGGTGCT GATGACCGCG CTGGTGGCGG CCTTCGCGCT GACGCCGCTG CTGCTGTCGG CCGATGCCCC GGGCAAAGAG ATCCTGCATC CGGTGGCGGT GGTGATCTTC GGCGGGCTGG TCAGCTCGAC GCTGCTCGAC ACCCTGCTCA CGCCGGTGCT GTACCTGAAG TTCGGCCGCA AGGCCACCGA GCGCCTGCTC GAACAGGAGC AGCAGCCCGG CACCACGACG CAAGGCCCTC AAGAGGCTTA CTGA
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Protein sequence | MFNWIVRYSL HNRLLVLAFA AILMVYGAMT ALRTPVDVFP DLNKPLVTVL TEAGGMAPEE VEQLVTFPLE TALNGMPGVT RVRSTSGVGL AVVYAEFDWG TDIYRNRQLV AERLALVREQ LPAGINPSMG PVSSIMGEVM LLALPLDGGK DGARATPMQA REYADFVLRP RLLSIPGVSQ VIPIGGDVRQ LRVEPDTARM AQFGVSLSQI ESALQGFSSN AGGGFIDLNS REYLIRHIGR TNRVEDLQGL AVAWSGGRAI LLEQVASVRY AAGQKRGDGG YNGVPAVVVS IQKQPAADTV RLTRDIESAL DELKQGRPAG LSEPRVLFRQ ADFILASVGN VSEALRDGAV MVAIVLFAFL LSARTTLISL VAIPLSLAVT ALILKLMGQS INVMTLGGLA IAIGELVDDA VVDVENILRR LKQNRALARP LPLLEVVRQA SVEVRSGIVY ATIIVALVFV PLFALPGIEG RLFTPLGIAY IVSILASMFV SMTVTPVLCS YLLPRMKRLG HGDSPVVARL KRLDERLLNW SFARARLLMS LAVMAVVVAA TTVPYFPRAF LPPFNEGSLV LGMVFNPGTS LAEANRMGSL AETLIQEVPE VTQVGRRTGR AELDEHAEGV HSAEIDVDLK RSDRNREQIM AHLRAKLAVL PAQVAIGQPI SHRLDHLLSG VRAQIALKVF GDDTDTLRGL AEQLRQGLVS VPGLVDLTVE KQVLIPQITV RIDHRKAAQA GLSPGEAIRV LQALTDGAHG AQIVDGARRY DLVLRLPDAA RSPQDLARTL IDTPAGRLPV SAIASVEEND GPNQIGRENG RRRIVVYANT DGSDMSRIVA DVRAVIASTP MPQATFVSLE GQFQAQEQAT QLIVGLSLVS LLLVALVLYS RYKSMVLAGI IMANIPLALI GSVVAMWIAG VSLSVASMVG FITLAGISTR NGILKVSHYV NLCRLEGEQF GPAMVVRGSL ERLTPVLMTA LVAAFALTPL LLSADAPGKE ILHPVAVVIF GGLVSSTLLD TLLTPVLYLK FGRKATERLL EQEQQPGTTT QGPQEAY
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