| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1858 |
|---|
| Symbol | |
|---|
| ID | 4439219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 1849416 |
|---|
| End bp | 1850177 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 639673674 |
|---|
| Product | permease |
|---|
| Protein accession | YP_819551 |
|---|
| Protein GI | 116630398 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000000306666 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.00000000438833 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCCTT TTTTCTTATT CATTTATCTG ATTTTTGGTG GAATTTTAGG TGGCCTTCTC
TCAACAATTG CAAGTATGGC GTCCCTTGCC ACTTATCCAG TCCTCCTTTC AGTTGGTATT
CCCCCAGTTT ATGCAAATAC TACTAATGAT GCAGCCTTAA TCTGGACTGG TGTTGGATCA
ACTGCATCTT CACTTAAAGA ACTAAAGGGT CACTGGAAAC AAGTTAGTTT CTATTCAATT
TTTACAATTA TTGGATCAGC TTTAGGCTGT ATGCTTTTAA TTCAATTTCC CGGAAAAATA
TTTGAGAAGA TTGTTCCCTT CTGTATCGCT TTTTCTGGTT TAATGATTTT ATTCAGTGGA
GAAATTCATC TTGGAAATGA AAGTGATCAT CCTAATCGCT TAGTTCAAGC TCTATCACTT
TTATGCTTAT TGATTGCTGG AGCTTACGCT GGTTACTTCG GTGCTGCTAG TGGCGTTTTA
ATGTTAGTTA TCTTGAATGC AATCAGTGAC GACGATTTTC TGACTGTTAA TGCTATGAAA
AACATTATTG GCGCACTATC AAACTTGGTT GCGCTGATCA TTTACATGTT TACTGAAAAA
ATTTATTGGA ACGCTGCTAT TCCCTTGGCA ATTGGAGCGT TGATTGGTAG TTACTTTGGG
CCACGTATCA TGCGCCACAT TCCGGTTAAG ATCATTCGTT TGGTAATTGC TGTTTTAGCT
CTCATTCAAG CTGCTTACTT TGCTTATACT GCATATAAAT AA
|
|---|
| Protein sequence | MSPFFLFIYL IFGGILGGLL STIASMASLA TYPVLLSVGI PPVYANTTND AALIWTGVGS
TASSLKELKG HWKQVSFYSI FTIIGSALGC MLLIQFPGKI FEKIVPFCIA FSGLMILFSG
EIHLGNESDH PNRLVQALSL LCLLIAGAYA GYFGAASGVL MLVILNAISD DDFLTVNAMK
NIIGALSNLV ALIIYMFTEK IYWNAAIPLA IGALIGSYFG PRIMRHIPVK IIRLVIAVLA
LIQAAYFAYT AYK
|
|---|
| |