Gene LGAS_0410 details

Gene Information

• Locus tag: LGAS_0410
• ID: 4438883
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactobacillus gasseri ATCC 33323
• Kingdom: Bacteria
• Replicon accession: NC_008530
• Strand: +
• Start bp: 427527
• End bp: 434900
• Gene Length: 7374 bp
• Protein Length: 2457 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 639672268
• Product: adhesion exoprotein
• Protein accession: YP_814253
• Protein GI: 116629081
• TIGRFAM ID: [TIGR01167] LPXTG-motif cell wall anchor domain; [TIGR02331] Rib/alpha/Esp surface antigen repeat

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 67
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGGTGCCAC AATTTACTTG GGGGGGGGTA AACGCCCAAG CTGTACGCGC TGATAGTGTT 
AATGAGGATG CTACTGAACA AGTAGAGAAG AAGGATGAAG CTAACGTTAA GGCAGCAGAA 
GTAAAGACTA CTGAACAAAA GCAAGAAAAT AATAAGACAG CGGTTTCTGC TACTAATGAA 
AATGCTAAGC AAAATGTTGC TGAAAATACA TCAGATAGTA AAAAGGTTGC ATCAAATAGG 
GATGTTAATG TTATTAAAAA CGATGTAACT ACTGATGAAA AAGCAGCTGC TAAGTCTAGT 
GTTCAAACAG ATAAAGATGT TAATGCGAAT AAGTTGAACA CTAATACTGT TTCAGTGAAT 
AAGCTTCAGA GAAATGTTAA TGTTGCTGGA CTTGCTGAGA GCAAGGCTAC TAGTGAGATA 
AATAGTACTC TTTCGGTTCG AGAATCAATG CAACAAAAGG CAGTGAGCTT AAAAGCTAAT 
GAAATAGCCC GTACAGTTAT AATGAATAAG CCTGCAGGTC CTGACCAAAT TACCCAATCT 
GTAAAATTAG GAACTATGTT AGGGAGTAGC AATGGACAAA TTATAGATGG AAAAACTACT 
AAAATTTATA CTGCAACTGT CATAGCTGTT GGGTCAAGTA CAGATATGAA AAAGTATAGA 
GTCACAGTTG ATTCTGATAC TGGTGAAATA TTAGCAGGTC AGGATTTGTA TGATACATTT 
ATGAATCTCC AACCAAGTGA TTTTAAAGTT AACCTAGACG CTATAGATCA AAGCCAAATT 
GACGTACCCG GTTATACTTG GAAAATTACC AGTGCAACTC CAGCAGGAGC TAATATTGGG 
AAGGAAGATT ATACATTTGG TAATCCGCAA ACGATTACGA TAGATTATAC TCGCGATGTC 
GAAGGTAATA TAAAGAAAAA GGTTACAGAA ATTACCGATA AGTTAGTAAA TAATCAAATG 
ACGACCGAAC CAGCTAGAAC AGTTATTCTG AAAAAGACAA CAACTGGAGC TGCTAATGAT 
GAAACAATTG TACAAAAAGC TGATATTAGA GGATTAGCTA GAACAAGTAG TAAAACAGTA 
GCTGGCATAA CTGAAAAAAA GATAGAAGTA GCTATTGCGC CTTATGTTGA ACCGGATAAA 
CCTTCTAGTC AATATTACAA GCAGTATACT ATCACGTTTA ATCCCGATAC CGGACAAATA 
ATTTCTGGTC AAAATGACTA TGATCAATTA ATGGCATTAA AACGTAGTGA TTTTAAAGCG 
GATTTACCAG CCATTGAAGA TAGTCAAATT GACGTACCCG GTTATACTGC GATAATTACC 
AGTGCAACCC CAGCAGGAGC AGGATTAGAA GCTGAAACAT ATACATTTGG CCATCCACAA 
ACGATTACGA TAGATTATAC AAAAGTAAAA CACACTGTAA CTTATCAATT TAAAGATCCG 
TTTGGCAATC AAGTGGGTAC TTCGGTACCA GTAACTGGTG CAGTTGGTAG CAATCAATCG 
GTTAACTTAA CTCTTCCAGA TGGTTACCAA CTTGCTTCAG GTAGCCTTCC AACTAGTGTT 
ACTATCCCTG AAAGTGATAA AATTATTCCA ATTCCTGTAA AACATCAACT TACAATTACT 
CTTTCAGGTG AAAGTGTATT TAATTATGCG GATGATAACT GGCAAAATTT AGTTGAGACT 
AATGAACTTC CTGCTAGTGG CTATTATGTT GAGTTTAATG ATGCTAACGC TAGGGTACAA 
CTGAATGATG GCGATGTAAC GTATAATGAA AATAGAAATG CCGGAACTTA CACAGTTAGT 
CTAACCGAGA AGGGTCTTAA TGACATTAAG GATCAATCGC ATGATAACTT CATTTATCCA 
GATCTTAAGG ATGTCAAAAG TGAGGCCAAG TTTATTATAA ATAAAGGAAA TAAAACAATT 
TCTCTTATGG GAGGAGATAC GAAGGTATTT GATAATACTT CGACTCTTCC AGATCAGGGT 
ACTTTCTATT CTGGACTAGG TCTTGCGGAT AACGATCAAG GTAGAATATC AGTTTACAAT 
TCAGATGGTA ATCCTAGAAC AATTCAATTA ACACCAGCTG ATGTAGAATT TTGGTTTAAT 
GGACATAAAA TTGCTAAAGA CCAAGCTAAG AATGTTGGAA ATTACAATCT TCGTTTAACT 
GATGATTTTA TTAATAAAGT TAAAGCTGCT GATGGTAATA ATGGGAATAA CTACGAGTGG 
GCTTATGGAA CTAACACTCC TACTGGTAGT GATACTTACA CTGCTGACTA TGTAATTTAT 
CAAGCAACCG GTAAGGCAAA GTTAAGTGGT AACAATTCTA AACTTTATGA TGGCAATGCT 
GTAACTACTG ATGATGTCAA TAAGGGTAGA AAGATTACTA TTGATTTAAC TTTACCAGTC 
TATAAACAAG CTGATGAACC AGGTGATGAG CCTCAATTAT TGGGAACTGT TGATTTAGGT 
AAGTATACGC TTCAAGATGG CGACTATACT TGGGCTAATG GAACTGCGCC AACTAAAGGT 
GGATCTTACA CTATTAATTT GAACAAGGAT AAGATTTTAG CCCACTTACA AGATCGTTTG 
GTTGCTTTAG CAGGAAAGGG AACAGATCCT GACGATTCTA CTAAGTCTTT AAGTAACGTA 
ACCATTTCTG CTGATGATAT GGCTGGTCAA GCAACATTTG CCATCGAAAC AACTACAACC 
TACCAATTTG TAGATGATGA CGATAATGGT AGTAAAGTAG GTACTCCTGT AAGTAAAACA 
GGTCTTAAAG GTGAGAGTTC AAATATTAGT CTAACTGTTC CAACTAACTA TGTTTTAGCT 
GCTGGTCAAA CTTTACCAAC TAGTGTAACT TTTGGTGATA CTAACACTAC AGTTGATATT 
CACTTGAAGC ATGCAACTAA GACTGTAGAT AAGAATAATG TTCCAGATGG TTACACTAAA 
GATGATTTTG CTGAGACTAT TAATCGTACA ATCACTGCTA AAGAGCCAAC TGGTGATGTT 
GATTTAAGTC AAACAACTGA ATTGACGAGA ACTGGAACTT ATGACGAAGT AACTAAGAAA 
GTTATTTCTT ACGGCAACTG GACAACTGGT AACTTTGACG AAGTTACAGC TCCAGAAGTA 
GCAGGTTACA CACCAAGTCA AGCAAACGTA GCTGCCGTAA CAGGAGTAAC ACCTGACTAT 
GTTGATCCTA AGGTTGTAAT TACTTATGCA CCAAATGATC AAACCGGTAA GATTTCTTAC 
GTTGATGTGA ATACTGGTAC TGAGGTAGGT AATACTCCAT TAACTGGTAA GACGGATGAA 
GAAGTAACAA TTAATCCAGT TGCACCAACA GGCTGGAAGA TTGTTGACGG TCAAAGCATC 
CCTCGGACTG AAAAGGCTAC TCCAACTGGT ATTCCTCCCG TAACTGTTAA AGTAGAACAC 
AAGACTACAG TTGTTCCACC AACAGATCCA AAGACACCAA AAGATAAGTT GCCTGATAAT 
CCAGACAAGC ACTATCCAGA TGGCGTTGGC GAAAAAGACT TGAACAAGAT TATTGTTCGT 
CAAATCACAG TTGTAAAGCC TGACGGAACA AGAGAAAAAC ACGATCAATC AGTTAAATTA 
ACTAGAAATG CAACAGTCGA TGAAGTAACT GGTGAAGTAA TTAAATACGG TGACTGGACA 
ACTAGCAACT TTGGTGAATA CGATGCTCCA ACAGTTCCAG GCTACACCCC AAGCCAAGCT 
AAGGTTGAGG GTGTAAAAGT AACTGCTGAT AGTGACTTTG CTCCAGTTAC AATTACTTAT 
ACTGCTAACC CTCATACTTT AAACATTAAT TATGTTGATA AAGATGGCAA TAAGATTGGC 
AATTCTTACC AAGTTCCAGG TAGGACTGAC GAAACAGTTG CTGTTGATGT TCCAGGACAT 
GTTCCAGCAA ACTGGGAACT TGTACCAAAA CAGAAGTACA CTACTTCAAT TACATTTGGT 
TCAGATGATC CTCAAGATCA AAACTACGTA ATTCAACATA AGACTACTAC GACCGATGGT 
AGAGATCACA AGGACAATCA AGACCTATAC CGTGAAGTTA CGAGAACAAT TTTAATGAAG 
GTTCCAAATG CAACGAGTCA AGGTAGAGAA ACTGAAACTT TGAGTTTCTA CAGAATTAAG 
ACTCACGATG AAGTAACAGG TAAAGATACT TATAGCGATT GGGCTTCAAA TGTCACAGGT 
GATAAGATTG CCTTTGATGA GTTTGATGTT TCAAAGACTA ATGATGGTAA AGAAATCGCT 
GCCGGCTACA CACCAACTTC AAATGATGTA GTCTTAGAAG ATAAGAATGG CGATAAATTT 
GTACCAAGTC AATCAGCCTT GAAGAATGGA GTTCCAGCAG ACAGTTTCAC TGTTGAAGTT 
GCTTACACAC CAAATGCCCA AAGGACAACT GTAACTTATG TTGATGAGAA TGGTAAAGAA 
ATTACCAATC CAGATGGCAG TGTAATTCCT GGCAGTCACT ATGATTTAAC TGGTGTTACT 
GACCAAAGCA ATGTACCAAC TAATATCCAA AATAATGTTC CAACTAACTG GCATATTACT 
GATCCAGAAG TTCCAGCAAC GATTACCTTT GGTGCAGATG GTCATACTCC AATCAAGGTT 
CATGTAGCTC ACAACACTAA GCCTGTTGAT AAGAACGATG TTCCAGATGG CTACAAGGAA 
AGTGACTTTA GTAAGACTAT TAATCGTACA ATTACTGCTA ATGAACCAAG CAAGAGTGTT 
GATTTGAGTC AAAAGACTGA ATTGACTAGA ACTGGTACTT ACGATGTAGT GACTAAGAAG 
GTTATTTCTT ACGGTAACTG GACAACTGGT AAGTTCGATG AAGTTAAAGC ACCAGAAGTT 
GCTGGTTATA CTCCAAATCC AGCTTCTGTA AACGCAGAGT CTGTAACAGC TGATTATGTT 
GATCCTAAGC TTGTAATTAA TTACACACCA AATGATCAAA CTGGTAAGAT TTCTTACGTT 
GATGTGAACA CTGGTACTGA AGTAGGTATA ACACCGTTAA CTGGTAAGAC TGATTCAGAT 
GTAACAATTA CTCCATCTGC TCCAGCAGGC TGGAAGATTG TCGATGGTCA AAATATTCCT 
ACTACTGAAA AGGCTACTCC AACAGGAATT GCTACCGTAA CTGTTAAAGT TGAACACAAG 
ACAACAACAG TTCCACCAAC AGATCCAAAG ACACCAAAGG ATAAATTACC TGATAATCCA 
GACAAGCACT ATCCAGATGG CGTTAGCGAA AAAGACTTGA ATAAGACAGT TGTTCGTCAA 
ATCACGGTTG TAAAACCAGA CGGAACTAAA GAAAGTCACG ATCAATCGAT TAAGTTAACT 
AGAACTGCAA CAGTTGACGA GGTAACAGGT GAAGTAACTA AATACAGTGA CTGGACAACT 
GGTAACTTTG GTGAATACGA TGCTCCAGTT ATTCCAGGCT ACACTCCGAG TCAAGCTAAG 
GTTGAAGGTG TAAAAGTAAC AGCTGATAGT GACTTTACTC CAGTTGAGAT TACTTACACA 
CCAAACGCAC AAAAGACAAC CGTAACTTAT GTTGATGAGA ATGATAAAGA AATTACTAAT 
CCAGATGGCA GTGTAATTCC TGGCAGTCAC TATGATGTAA CTGGTGTAAC AAATAAGAAA 
GTTGATACTA ATATTCAGAA GAATGTACCA ACTAATTGGC ATATTACTGA TCCAGAAGTT 
CCAGCAACTA TTACCTTTGG CGCAGATGGT CATACTCCAA TCACGGTTCA CGTAGCTCAC 
AACACTAAGC CTGTTGATAA GAATGATCTT CCAGATAACT ACAAGGAAAG TGATTTCAGT 
AAGACTATCA ATCGTACCAT TACTGCAAAA GAACCAAATA AAGATGTTGA TTTGAGTCAA 
GAAATTGAAT TAACAAGAAC TGGAACTTAC GATGAAGTAA CTAAGAAAGT TATTTCCTAC 
AGTGATTGGA CAACTGGTAA GTTCGATGAA GTTAAGGCTC CAGAAGTAGC TGGTTATACT 
CCAAGTCAAG CTAAAGTAGA CGGTGTTGAT AAAGTAACAG TAGATTATGT AGATCCTAAT 
GTGGTAATTA CTTACATTGA AGATCCAGTT GGTCAAGATA TCACAGTGAA GAAGGGTGAC 
ACTCCAGATC CAGAAGATGG CGTCAAGAAC CATGGTGACT TAGACAAGAT TACTGATCCA 
AAGCACCCAG GTACCAAGAC AACATATACT TGGAAGAAGA CTCCAGACAC AAGTGTAGCA 
GGAGATGTCC CAGCAACAGT TGTTGTTCAT TACCCAGATG GTTCTGATAA GCCAGTTGAT 
ATTACTGTCC ATGTTGTCGA TGATACTCCA GTAGTACCAA CCAAGAATCC AGATCCAGTT 
GGTCAAGATA TCACAGTGAA GAAGGGTGAC ACTCCAGATC CAGAAGATGG CGTCAAGAAC 
CACGGTGACT TAGACAAGAT TACTGATCCA AAGCACCCAG GTACCAAGAC AACATATACT 
TGGAAGAAGA CTCCAGACAC AAGCGTAGCA GGAGATGTCC CAGCAACAGT TGTTGTTCAC 
TATCCAGATG GTTCTGATAA GTCAGTTGAT ATCACAGTTC ATGTTGTCGA TGATACTCCA 
GTAGTACCAA CCAAGAATCC AGATCCAGTT GGTCAAGATA TCACAGTGAA GAAGGGTGAT 
ACTCCAGATC CAGAAGATGG CGTCAACAAC CACGGTGACT TAGACAAGAT CACAGATCCA 
AAGCACCCAG GTACTAAGAC AACCTACACT TGGAAGAAGA CTCCAGACAC AAGCGTAGCA 
GGAGATGTCC CAGCAACAGT TGTTGTTCAC TATCCAGATG GTTCTGATAA GTCAGTTGAT 
ATCACAGTTC ATGTTGTCGA TGATACTCCA GTAGTACCGA CCAAGAACCC AGATCCAACC 
GGTCAAGATA TTCACACTCC ACAAGGTAAA GTTCCAACTC CTGAATCAGC TATTACTAAC 
AAAGATAAGA TGCCAGATGG AACTAAGTAC ACTTGGAAGG AAATCCCAGA TGTTAATACT 
TTAGGTAAAC ATCCTAATGT AGTTGTTGTA ACTTACCCAG ATGGAACTGC TGTTGAAGTA 
AAAGTTAATG TCTTTGTTGA TGGTACTCCA GAAGTAAAGA AAGAAACTAA AGCTCCAGTA 
GTTAAGAAAC AGGTTGTTGA ACCAACGAAA GTTGAAACAA GACAAAAGTT GGTTAATAAT 
TATGTGGCTC CTCGTGCAGT AGAAGTTCAA AGAGCTCAAG CTAAAGGTAA GCGTCAATTA 
CCACAAACTG GTGCTAAAGA AAATATTGCA AGTGAAGTAC TAGGCATGCT TTCAGTAGGC 
TTAGGTGCAT TAACTGCAGG ATTTGCTTCA AAGCGTCGTA AGAAGAATAG ATAG 

 

Protein sequence

MVPQFTWGGV NAQAVRADSV NEDATEQVEK KDEANVKAAE VKTTEQKQEN NKTAVSATNE 
NAKQNVAENT SDSKKVASNR DVNVIKNDVT TDEKAAAKSS VQTDKDVNAN KLNTNTVSVN 
KLQRNVNVAG LAESKATSEI NSTLSVRESM QQKAVSLKAN EIARTVIMNK PAGPDQITQS 
VKLGTMLGSS NGQIIDGKTT KIYTATVIAV GSSTDMKKYR VTVDSDTGEI LAGQDLYDTF 
MNLQPSDFKV NLDAIDQSQI DVPGYTWKIT SATPAGANIG KEDYTFGNPQ TITIDYTRDV 
EGNIKKKVTE ITDKLVNNQM TTEPARTVIL KKTTTGAAND ETIVQKADIR GLARTSSKTV 
AGITEKKIEV AIAPYVEPDK PSSQYYKQYT ITFNPDTGQI ISGQNDYDQL MALKRSDFKA 
DLPAIEDSQI DVPGYTAIIT SATPAGAGLE AETYTFGHPQ TITIDYTKVK HTVTYQFKDP 
FGNQVGTSVP VTGAVGSNQS VNLTLPDGYQ LASGSLPTSV TIPESDKIIP IPVKHQLTIT 
LSGESVFNYA DDNWQNLVET NELPASGYYV EFNDANARVQ LNDGDVTYNE NRNAGTYTVS 
LTEKGLNDIK DQSHDNFIYP DLKDVKSEAK FIINKGNKTI SLMGGDTKVF DNTSTLPDQG 
TFYSGLGLAD NDQGRISVYN SDGNPRTIQL TPADVEFWFN GHKIAKDQAK NVGNYNLRLT 
DDFINKVKAA DGNNGNNYEW AYGTNTPTGS DTYTADYVIY QATGKAKLSG NNSKLYDGNA 
VTTDDVNKGR KITIDLTLPV YKQADEPGDE PQLLGTVDLG KYTLQDGDYT WANGTAPTKG 
GSYTINLNKD KILAHLQDRL VALAGKGTDP DDSTKSLSNV TISADDMAGQ ATFAIETTTT 
YQFVDDDDNG SKVGTPVSKT GLKGESSNIS LTVPTNYVLA AGQTLPTSVT FGDTNTTVDI 
HLKHATKTVD KNNVPDGYTK DDFAETINRT ITAKEPTGDV DLSQTTELTR TGTYDEVTKK 
VISYGNWTTG NFDEVTAPEV AGYTPSQANV AAVTGVTPDY VDPKVVITYA PNDQTGKISY 
VDVNTGTEVG NTPLTGKTDE EVTINPVAPT GWKIVDGQSI PRTEKATPTG IPPVTVKVEH 
KTTVVPPTDP KTPKDKLPDN PDKHYPDGVG EKDLNKIIVR QITVVKPDGT REKHDQSVKL 
TRNATVDEVT GEVIKYGDWT TSNFGEYDAP TVPGYTPSQA KVEGVKVTAD SDFAPVTITY 
TANPHTLNIN YVDKDGNKIG NSYQVPGRTD ETVAVDVPGH VPANWELVPK QKYTTSITFG 
SDDPQDQNYV IQHKTTTTDG RDHKDNQDLY REVTRTILMK VPNATSQGRE TETLSFYRIK 
THDEVTGKDT YSDWASNVTG DKIAFDEFDV SKTNDGKEIA AGYTPTSNDV VLEDKNGDKF 
VPSQSALKNG VPADSFTVEV AYTPNAQRTT VTYVDENGKE ITNPDGSVIP GSHYDLTGVT 
DQSNVPTNIQ NNVPTNWHIT DPEVPATITF GADGHTPIKV HVAHNTKPVD KNDVPDGYKE 
SDFSKTINRT ITANEPSKSV DLSQKTELTR TGTYDVVTKK VISYGNWTTG KFDEVKAPEV 
AGYTPNPASV NAESVTADYV DPKLVINYTP NDQTGKISYV DVNTGTEVGI TPLTGKTDSD 
VTITPSAPAG WKIVDGQNIP TTEKATPTGI ATVTVKVEHK TTTVPPTDPK TPKDKLPDNP 
DKHYPDGVSE KDLNKTVVRQ ITVVKPDGTK ESHDQSIKLT RTATVDEVTG EVTKYSDWTT 
GNFGEYDAPV IPGYTPSQAK VEGVKVTADS DFTPVEITYT PNAQKTTVTY VDENDKEITN 
PDGSVIPGSH YDVTGVTNKK VDTNIQKNVP TNWHITDPEV PATITFGADG HTPITVHVAH 
NTKPVDKNDL PDNYKESDFS KTINRTITAK EPNKDVDLSQ EIELTRTGTY DEVTKKVISY 
SDWTTGKFDE VKAPEVAGYT PSQAKVDGVD KVTVDYVDPN VVITYIEDPV GQDITVKKGD 
TPDPEDGVKN HGDLDKITDP KHPGTKTTYT WKKTPDTSVA GDVPATVVVH YPDGSDKPVD 
ITVHVVDDTP VVPTKNPDPV GQDITVKKGD TPDPEDGVKN HGDLDKITDP KHPGTKTTYT 
WKKTPDTSVA GDVPATVVVH YPDGSDKSVD ITVHVVDDTP VVPTKNPDPV GQDITVKKGD 
TPDPEDGVNN HGDLDKITDP KHPGTKTTYT WKKTPDTSVA GDVPATVVVH YPDGSDKSVD 
ITVHVVDDTP VVPTKNPDPT GQDIHTPQGK VPTPESAITN KDKMPDGTKY TWKEIPDVNT 
LGKHPNVVVV TYPDGTAVEV KVNVFVDGTP EVKKETKAPV VKKQVVEPTK VETRQKLVNN 
YVAPRAVEVQ RAQAKGKRQL PQTGAKENIA SEVLGMLSVG LGALTAGFAS KRRKKNR