Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_1928 |
Symbol | |
ID | 8381091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 2111810 |
End bp | 2113948 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 645004682 |
Product | Carbohydrate-binding CenC domain protein |
Protein accession | YP_003161873 |
Protein GI | 256833146 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGACGCT GGCAGAGGAC AACTGCCTTC GGTGCGTTCA TGGCGCTCAT GGTCGGCAGT CTTGCCGCCA TACCAGCCAC ATCGGCCACA GCAGCAGGCG AAGAAATCAT CGTCAACGGA GGATTCGAAA ACAACACCAA CGGGTGGGAG ATCCGCAACG GGGGGAATCT CTGGCTCGAC CCAGACAAGA CCAGTGGAAA CTCCTCCGGT TTCATCACCC ACCGGGAATC CACCCAATCA GGGCCCTGGC AAAATATCAC CGGGAAAGTC CAAGCAGGCA AGACCTACAC GGTCAGCGCC CGAGTGAAGT ACAAGTCAGG GCCAGCCACC AAACAGTTCT TCATCACGAA CTTCTACGGT GGTGGCAGCT ACACAAACCT CGCCGGGGCA ACAATCCCCA AAGACACCTG GGGCACCATC TCAGGGACCT TCACCATCCC CAGCACGCAA AGCGTCGCAG AAGCGCGGCT CTTCATTGAA ACACCATGGG TGGCCAACCC TGCCGACGAC CGCGATAACA ATCTCATGAA CTTCCGAGTC GATGACGTCT CGTTGAAGGA AGTCACCGGT GGGACACCAA CAAACCCCAC CGACCCAGGC AACCCAGCCA ACCCCATCAT GACCACAAAC CACACGGTTC ACACTGGGGT GCAGGCCAAA AAGATCGGGG ATGGCAACCC ACTAGTGAGC CACAAGTTCG GTGCAGACCC CTACCACCTT GTGTACAACG GCCGTGTCTA CATGTACATG ACCAATGACA CCCAAGAATG GGCAGCACGC AACAACGGGG GCAGCAAGAA CACTTACGCC GCGATCAACA CCCTGTCCGT CATCTCGTCG TCAGACCTGG TGAACTGGAC AGACCACGGG AACATCGCCG TGGCGGGTCC CAACGGTGCG GCGAAGTGGG CGAACAACTC ATGGGCACCG GCTGTGGCAG TGAAGAAAAT CAACGGAAAA GACAAGTTCT TCCTCTACTT TGCCAACAAC GGTTCCAGCG TAGGAGTACT CACAGCAGAC TCCCCCACCG GTCCGTGGGT TGATCCCATT GGAAAACCCA TCGTCAACGC CCAAACACCG GGTGCATCAA ATGGCAAAAA CTGGCTGTTC GACCCAGCCG TTCTCGTTGA CGATGATGGG CAAGGCTACC TCTACTTCGG TGGTGGCGGC GAAGATGGCT CAGGGTCCTC CCAAAACGAG AACAACCCCA AGTCATCCCG AGTCATCAAA CTCGGTGCCA ACATGATCAG CACGTCAGGG TCGGCGGCAG TGATCGACGC CCCCGCCATC TTTGAGTCGT CTGGCATCCA CAAACGCAAC GGCAAGTACT ACTACTCCTA CTCGTCGAAC TTCGGCAACG GAGGCCCAGG ACGTCTTCCC GGATACCCGG CACACGGGGT CATTGCGTAC ATGATGGCTG ACAACCCCAT GGGGCCATGG ACTCCAGCAC AGTACAAGGG AACCGTGCTG CCGAACATGT ACCAATTCTT CCAAGTAGGG GGAAACAACC ACCAATCATT CTTTGAATTC AATGGCAAGT GGTACATCTC CTATCACGCA GGAACGTTGG ACAAGGCCCT GAACAACAAT GTTGGGGGAA ACACCAAGGG TTACCGCAGC ACCCACCTGA ATGAAGTCAC GTACAACGCT GACGGCACCA TGCGTGTTGT CAACGCTGAC TACAAAGGTG TGGCACAAGT GGGACGCCTA CGTCCCTACT CCGTCAATGA AGCCGAAACC ATCGGTTGGC AAAACGGGGT GACCACCACC AACATCACTG AAGGATCACG CCAGTTCCCT GGGTCCTCGG TCAACCTGGC AGTCAACAAC ATTCACAACA ACGATTGGAT CGGTGTCGGC GGAGTTGACT TCGGTTCCAG CGGTGCAGCA AGCATCACCG CGAAGGTCAA ACCACTGACC AACAACGGAA CCATTGAGGT ACGCCTAGGA TCCCCGGACC GCAATTCCTC ATCATCCCGG CTCGTCGCCA CGCTCAACGC CAACACCCCG GCGAACCAGT GGCGCGACAT CACCGCTCAA GTGTCAGGGG CAACAGGAGT ACAGAACGTC TACTTCGTCT TTAGAGGCGG ATCGGGTGCG CTGATGGAAT TTGACTCCTG GTCATTCACC CAACGCTAA
|
Protein sequence | MRRWQRTTAF GAFMALMVGS LAAIPATSAT AAGEEIIVNG GFENNTNGWE IRNGGNLWLD PDKTSGNSSG FITHRESTQS GPWQNITGKV QAGKTYTVSA RVKYKSGPAT KQFFITNFYG GGSYTNLAGA TIPKDTWGTI SGTFTIPSTQ SVAEARLFIE TPWVANPADD RDNNLMNFRV DDVSLKEVTG GTPTNPTDPG NPANPIMTTN HTVHTGVQAK KIGDGNPLVS HKFGADPYHL VYNGRVYMYM TNDTQEWAAR NNGGSKNTYA AINTLSVISS SDLVNWTDHG NIAVAGPNGA AKWANNSWAP AVAVKKINGK DKFFLYFANN GSSVGVLTAD SPTGPWVDPI GKPIVNAQTP GASNGKNWLF DPAVLVDDDG QGYLYFGGGG EDGSGSSQNE NNPKSSRVIK LGANMISTSG SAAVIDAPAI FESSGIHKRN GKYYYSYSSN FGNGGPGRLP GYPAHGVIAY MMADNPMGPW TPAQYKGTVL PNMYQFFQVG GNNHQSFFEF NGKWYISYHA GTLDKALNNN VGGNTKGYRS THLNEVTYNA DGTMRVVNAD YKGVAQVGRL RPYSVNEAET IGWQNGVTTT NITEGSRQFP GSSVNLAVNN IHNNDWIGVG GVDFGSSGAA SITAKVKPLT NNGTIEVRLG SPDRNSSSSR LVATLNANTP ANQWRDITAQ VSGATGVQNV YFVFRGGSGA LMEFDSWSFT QR
|
| |