Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3450 |
Symbol | |
ID | 3935924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 3497884 |
End bp | 3499890 |
Gene Length | 2007 bp |
Protein Length | 668 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637905824 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_511392 |
Protein GI | 89055941 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.472971 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAAG ATACCGACGA TCGTAAGCAG GACGGCGACG AGACCGAAAT GGGCCTGGAT ATGAGCCAGG CCGCCGTCAA GAAAATGATC GCGGAGGCTC GGGTCAGAGG CTACATCACC TACGATCAGC TCAACACCGT TCTGCCGCCG GAGCAGGTCA GCTCGGAGCA GATCGAAGAC GTCATGTCGA TGCTGTCGGA GATGGGCATC AACATCATCG AGGATGATGA GGCCGAGGAA GGCGACGACA AACCCGCCGG CGAATTGGTG ACCACCGAAG GCTCCCGCGA GGTCGCGGTT GCAGCCACGG AGACCGAGAA ACTCGACCGC ACCGATGACC CCGTCCGCAT GTATCTGCGC GAAATGGGCA GTGTGGAACT GCTGTCGCGT GAGGGCGAGA TTGCCATCGC CAAGCGGATC GAGGCCGGGC GCAACACGAT GATCGCGGGC CTGTGCGAAA GCCCGCTGAC CTTCCAGGCG ATCACCATCT GGCGTGACGA ACTTCTGGAA GAAGACATCC TGCTGCGTGA TGTCATCGAC CTCGACACCA CCTTCGGGCG CACGATGGGC GATGAAAACG ACACCCCGGT CGTGCCCGCA GGCGTCGGCT CCACGCCGCC ATCCGCCACG CCCGCCCCCC CGCCGGAGCC AAAGAAAGAA GAGCCTACGC AGGAACTGGA CGCCGACGGC AACCCCATCG CCAAGGACGA CGATGAGGAT GAGGACGAGC AGGCCAACAT GTCGCTCGCC GCGATGGAAC TGGCGCTGAA GCCCCAGGTC CTCGCCACGC TTGACCAGAT CGCCAACGAT TACATCCGCC TGTCGGAAAT GCAGGACAGC CGGATTTCGG CGACCCTGAA CGAAGATGAC AGCTTCTCCA AGGCAGAGGA GGCCGAATAC CAGCACCTGC GCTCCGAGAT CGTGGAACTG GTCAATGAGC TGCACCTGCA TAACAACCGC ATCGAGGCGC TGGTGGACCA GCTTTACGGC ATCAACCGCC GGATCATGTC CATCGATTCC AGCATGGTGA AGCTGGCCGA TCAGGCCCGC ATCAACCGCC GCGAGTTCAT CGAAGAATAC CGCAACCAGG AACTTGATCC GACCTGGATG GAGCGGATGA CGCAAAAGTC CGGCCGCGGC TGGCAGGCGC TGATGGAGCG CTCGTCGGGC AAGATCGAGG AATTGCGCGG GGATATGGCG CAGGTCGGTC AGTATGTGGG CCTCGACATC CCCGAATTCC GCCGCATCGT GAACCAGGTC CAGAAGGGCG AGAAAGAAGC CCGCCAGGCC AAGAAGGAAA TGGTCGAAGC CAACCTGCGT CTGGTGATTT CCATCGCCAA GAAATACACC AACCGGGGCC TGCAATTCCT TGATCTCATT CAGGAAGGTA ACATCGGCCT GATGAAGGCC GTCGACAAGT TCGAATACCG CCGGGGCTAC AAGTTCTCCA CCTATGCGAC GTGGTGGATC CGTCAGGCGA TCACCCGCTC CATCGCCGAT CAGGCCCGCA CGATCCGCAT CCCGGTCCAC ATGATCGAGA CGATCAACAA GCTGGTCCGC ACCGGTCGCC AGATGCTGCA CGAAATCGGC CGGGAGCCGA CGCCGGAGGA ATTGGCCGAG AAGCTGCAAA TGCCGCTGGA GAAGGTCCGC AAGGTGATGA AGATCGCCAA GGAGCCGATC AGCCTTGAGA CGCCCATCGG CGACGAGGAG GATTCACAGC TTGGCGATTT CATCGAGGAC AAGAACGCCG TCCTGCCGCT GGATTCAGCG ATCCAGGAGA ACCTCAAAGA AACCACAACC CGGGTTCTGG CCTCCCTCAC CCCCCGCGAA GAACGCGTCC TGCGCATGCG CTTCGGCATC GGCATGAACA CCGACCACAC GCTGGAAGAA GTCGGCCAAC AGTTCAGCGT GACCCGCGAA CGGATCAGGC AGATCGAGGC GAAGGCGCTG CGGAAGCTGA AGCACCCCAG CCGGTCAAGG AAGCTGCGGT CGTTCCTGGA TCAGTGA
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Protein sequence | MAKDTDDRKQ DGDETEMGLD MSQAAVKKMI AEARVRGYIT YDQLNTVLPP EQVSSEQIED VMSMLSEMGI NIIEDDEAEE GDDKPAGELV TTEGSREVAV AATETEKLDR TDDPVRMYLR EMGSVELLSR EGEIAIAKRI EAGRNTMIAG LCESPLTFQA ITIWRDELLE EDILLRDVID LDTTFGRTMG DENDTPVVPA GVGSTPPSAT PAPPPEPKKE EPTQELDADG NPIAKDDDED EDEQANMSLA AMELALKPQV LATLDQIAND YIRLSEMQDS RISATLNEDD SFSKAEEAEY QHLRSEIVEL VNELHLHNNR IEALVDQLYG INRRIMSIDS SMVKLADQAR INRREFIEEY RNQELDPTWM ERMTQKSGRG WQALMERSSG KIEELRGDMA QVGQYVGLDI PEFRRIVNQV QKGEKEARQA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLVR TGRQMLHEIG REPTPEELAE KLQMPLEKVR KVMKIAKEPI SLETPIGDEE DSQLGDFIED KNAVLPLDSA IQENLKETTT RVLASLTPRE ERVLRMRFGI GMNTDHTLEE VGQQFSVTRE RIRQIEAKAL RKLKHPSRSR KLRSFLDQ
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