| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3086 |
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| Symbol | |
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| ID | 3935557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3120258 |
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| End bp | 3121136 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637905457 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_511028 |
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| Protein GI | 89055577 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.375824 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCAGC GTGAAAACCC CCAAAACTCG TCACAAGATG TCGCCGATCT GCTTGGCGGC
GCTTTTGCCG GGCACACGAT GCAGCGCTTG CGAACGCCGG ATGGAAAGTA TCGCTACTCC
TATGTCAGCT CTGGTGTTCA GGCCTCTTTC GGCCTCGATC CGGAGGCTTT GATGCAGCTC
CAGGATGTTG ACCACAGTTG GTTGCACCCG GCCGACCGCT CCCTCTTCAT TGCCGCATTG
GAGCAATCCG CCGCGGCCTT GACCCGCCTG GACGAGGAAG TGCGCGTGTC GCTGGACGAC
GGCACCTTCA AATGGGTCCG CTCCATCGGG AACCCACGGC GGATGCGCGA CGGGACTGTC
ATCTGGGACG GCGTCGCGCT TGATGTCACG GATCGGCATG AGGCGAGTGA GGCGTTGGAA
CGAACGCTGA CACAAGTCAG GCAGAATGAA ACATCCGAGG GGCGGTTCTC CTACATCGCT
GCCAGCGACG TTCTTGACCG ATTGTCGAGC TTGCGCGCCG CGGTGGAGCA ACTGGATCTG
TCCGTCCCGA CAGCGGCCCA TGTCCACGCG GTGTTTCAGA AGTTTGAACG CGGCCTCTTT
GCGGCGCGTG ATCTGTTGGA CGACACCGCC CTCGATGAAA CGCGCCCCAC CGACCATGAA
CCGCACAAGG ACATCTCCGC CACCTTGACG CCGCGCCAAC AGGATATCCT CGGTCACGTC
AGTCGGGGTG CCACCAATCG CGACATTGCC AGGGCGATGG ATATCTCCGA AGGCACCGTG
AAGCTGCATA TATCAGCAAT CCTGAAACGA ACGGGCGCCC AAAACCGAAC CGAGGCTGCA
CTGGCCTGGA CCTCATCAAA CGGAACTCCG CGGCGGTGA
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| Protein sequence | MSQRENPQNS SQDVADLLGG AFAGHTMQRL RTPDGKYRYS YVSSGVQASF GLDPEALMQL
QDVDHSWLHP ADRSLFIAAL EQSAAALTRL DEEVRVSLDD GTFKWVRSIG NPRRMRDGTV
IWDGVALDVT DRHEASEALE RTLTQVRQNE TSEGRFSYIA ASDVLDRLSS LRAAVEQLDL
SVPTAAHVHA VFQKFERGLF AARDLLDDTA LDETRPTDHE PHKDISATLT PRQQDILGHV
SRGATNRDIA RAMDISEGTV KLHISAILKR TGAQNRTEAA LAWTSSNGTP RR
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