| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2426 |
|---|
| Symbol | rplM |
|---|
| ID | 3934883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2421265 |
|---|
| End bp | 2421759 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637904784 |
|---|
| Product | 50S ribosomal protein L13 |
|---|
| Protein accession | YP_510368 |
|---|
| Protein GI | 161898394 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0102] Ribosomal protein L13 |
|---|
| TIGRFAM ID | [TIGR01066] ribosomal protein L13, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0464276 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.161189 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCT TCTCTGCCAC GCCGGCGGAT ATCGACAAGA AGTGGATCCT GATCGACGCC
GAGGGCGTTG TTCTGGGCCG TCTTGCCTCG ATCATCGCCA TGCGTCTTCG CGGCAAACAC
AAGCCGTCCT TCACGCCGTC AATGGATATG GGCGACAACG TCATCGTCAT CAATGCCGAC
AAGGTGCAGG TGACGGGCAA CAAGCGCGAC AAGCCGAACT ACTGGCACAC GGGCTATCCG
GGGGGGATCA AGTCCCGCAC CACCGGTCAG ATCCTTGAGG GCAAATTCCC CGAGCGTGTT
CTGATGCAGG CCGTCAAGCG CATGCTGCCG GGCGGCAAGC TGTCGCGCCA GCAGATGACC
AACCTGCGTG TCTACGCGGG TGCCGAGCAT CCCCATGAAG CCCAAGATCC GATCGTCCTC
GACGTCGCAT CGATGAATTC CAAGAACACA CGGTCCGGCA ATGCCCAGTC CGCCAACACC
GGGGATCCTA AATAA
|
|---|
| Protein sequence | MKTFSATPAD IDKKWILIDA EGVVLGRLAS IIAMRLRGKH KPSFTPSMDM GDNVIVINAD
KVQVTGNKRD KPNYWHTGYP GGIKSRTTGQ ILEGKFPERV LMQAVKRMLP GGKLSRQQMT
NLRVYAGAEH PHEAQDPIVL DVASMNSKNT RSGNAQSANT GDPK
|
|---|
| |