| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_0034 |
|---|
| Symbol | |
|---|
| ID | 3932470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 31209 |
|---|
| End bp | 33158 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637902375 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_507976 |
|---|
| Protein GI | 89052525 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTGC GACGCCTGAT CACGTCTATT GTCCTCTGCT CGCTCCTCGG GACGCCTGCC
GCCACCGCCC AATCGGATGC AGACGCCCTG GCCGCAGCGC TTGCCCGCTA CAATGTGGGC
GATCTTGCCG GTGGCTCGAA TGCCGCGCGG GATCTCACTG ACCCGGTGGC GCTGGATATC
CTCGCCTGGA CCCGGCTGCG GCGTGGGGAG GGCAGTTTTG AGGAATATAT CTCCTTCCTC
GACCGCAACC CGGACTGGCC GGGTCTGGCG TATCTGCGCC GCCAGGGGGA GCCGTCTATT
CCAGAGGGGG GCGATGCGGC CTCAATCCTG GATTACTTCG CTGATGTCCT GCCCCAGACG
GGCGCTGGAT CCCTGGCGCT GGCCCGCGCT TTGGCCGATA CCGGAAACCC CGTGGTCGCC
GAGGCCATTG TCGTGCGGGC CTGGACATCT CTGGTGATGA CGGGCACCGA CGCCCAGGCC
CTGAACCGCG CCTTCGGGAA CCTGCTGACG CAGGACCACC ACATTGCCCG GCTTGACCAC
CTGCTGTGGG AAAACGCGGA GGATCGCGCG CGCGCCATGT TCTCCCTCGT GCCCGAAGAC
TACGTGCCTT TGGCCGAAGC GCGTCTGGCC CTGCGAGATC GCAGACCGGG GGTGAACGGC
CTGATTGATG CGATCCCCGC GTCATTGCAG GATGATCCCG GCCTCGCCTA TGAACGCTTC
ATCTGGCGGG TGCGCGAAGG GCTTTGGGAC ACGGCTGGTG CGCTGATGGT CGAACGCTCC
ACCTCTCCTG ACACTCTGGG ACGACCGGCG GAATGGGGTC GCCGTCGCGC CGATCTGGCC
CGCGACGTAA TGCGCGAAGG CGATCACGAC ACCTGTTATG ATTACGCATC CAACCATCAG
ATCGATCCCG AGGACGACTA CATCCGTTTT GCCGATCTGG AATGGGTTGC GGGCTATTGC
GCCTTGCAAC TGAACCGGGC TGACATCGCC GCCAATCACT TCCAGCGCTT CAGTGAGGTC
GTCTTCTCGC CCATCTCTGT CGGGCGCGCG GGCTATTGGC TTGGCCGTGC CCATGAGGCC
GCAGGCAATG CCGCGGCGGC GGCAGACGGC TACGCTCTGG GCGCGCAATA TCAGTCCAGT
TTCTACGGCC AACTGGCACA GGAACGCGGC GGGTTGCCTG TCGATCCGGA GTTCACGGGC
ACCCGCGACT ATGGCGATTG GCGCAATTCC AGCTTCGCGG ATCTCGATGT GTTTCGTGCG
GCGATCCTGC TTTACGAGGC GGGCGAGGTG AACCTGGCAG AACGGTTCTT CACCCATATC
ACGGAACGCC TGGATGAGAC GGAGGCCGGT ATGATGGGCG CGTTGATGCT GGAGTTGGAA
GAGCCGCACT ACGCGCTGAT GGTCGCCAAA CGCGCCGCCC AGTCGGGGCA TGAAATCTAC
CCCGCCTACT ACCCGCTGGC CGATTTGGAA GATGTGGACC TGCCCGTCCC CCGCGCCTTT
GCCCTATCCA TCGCGCGGCG CGAAAGTGAA TTTGACCCCG TCGTCGTGTC AGGCGCGGGC
GCGATTGGGC TGATGCAGGT GATGCCCGGC ACGGGACGCG ACTCCGCCGG TGAGCTGGGG
CTCGACTTTT CCGAGGCCCG CTTGCGCAAT GACCCCGCCT ATAACGTGCT TCTGGGCTCC
AACTATATCG CCGGGCTGCT GGAGGATTAT GACGGCAATC CGGTGCTGGT CACGATCGGC
TATAACGCCG GGCCGGGCCG CGTGCGGCAA TGGCGGGAGC GGTTTGGCGA TCCCCGTCAG
GCCGACGACG TGATCGACTG GATCGAAGAC GTGCCATTCT CGGAGACACG CAATTACATC
ATGCGAGTGA TCGAAAGCCT GCCCATCTAT GAGGCGCAAC TGACCGGCGA ATTGCCGACC
TTGGGATTGA GCGAGCGCTT GGTGCAATAG
|
|---|
| Protein sequence | MGLRRLITSI VLCSLLGTPA ATAQSDADAL AAALARYNVG DLAGGSNAAR DLTDPVALDI
LAWTRLRRGE GSFEEYISFL DRNPDWPGLA YLRRQGEPSI PEGGDAASIL DYFADVLPQT
GAGSLALARA LADTGNPVVA EAIVVRAWTS LVMTGTDAQA LNRAFGNLLT QDHHIARLDH
LLWENAEDRA RAMFSLVPED YVPLAEARLA LRDRRPGVNG LIDAIPASLQ DDPGLAYERF
IWRVREGLWD TAGALMVERS TSPDTLGRPA EWGRRRADLA RDVMREGDHD TCYDYASNHQ
IDPEDDYIRF ADLEWVAGYC ALQLNRADIA ANHFQRFSEV VFSPISVGRA GYWLGRAHEA
AGNAAAAADG YALGAQYQSS FYGQLAQERG GLPVDPEFTG TRDYGDWRNS SFADLDVFRA
AILLYEAGEV NLAERFFTHI TERLDETEAG MMGALMLELE EPHYALMVAK RAAQSGHEIY
PAYYPLADLE DVDLPVPRAF ALSIARRESE FDPVVVSGAG AIGLMQVMPG TGRDSAGELG
LDFSEARLRN DPAYNVLLGS NYIAGLLEDY DGNPVLVTIG YNAGPGRVRQ WRERFGDPRQ
ADDVIDWIED VPFSETRNYI MRVIESLPIY EAQLTGELPT LGLSERLVQ
|
|---|
| |