| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_18240 |
|---|
| Symbol | |
|---|
| ID | 7313822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothermothrix orenii H 168 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011899 |
|---|
| Strand | - |
|---|
| Start bp | 1947407 |
|---|
| End bp | 1949278 |
|---|
| Gene Length | 1872 bp |
|---|
| Protein Length | 623 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643612271 |
|---|
| Product | cytoplasmic alpha-amylase |
|---|
| Protein accession | YP_002509568 |
|---|
| Protein GI | 220932660 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.54152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTCTTTA TTAAATTATT TATAAAATAC AAAATATATG CGGCCTTAAT ACTATTAATA
CTATTACTAT CAGGATGTTC TAACATTAGC GAAGATGTCA ATAATCCTAA CCGGAGTTTA
TTTTTAATCG AATCTGAACC ATCTACAGGT GCCAGTGTAT CTAAAAACTT AACTGAAATC
ATCCTGATAT TCAGTAATGA CATAAATAAG GTTTCCCAGC TGGCCTTAAC AGATTTAATA
ACTGATAGTG ATATTCAGGG AATTGACTAT AATATAGAAG GAAACAAAGT AATTATCAAT
AACTTTTCCC TGGAACCAAC CTGTAATTAC CGGTTATCAT ATGAGGTTAT AGATATTTAT
GATAATCATT TACAGGGTTA TATAGAGTTT TTGGTTAACC AGAGTAATTA TCCTCAGATA
CCGGACCAGG AGGTTAACCA CACAATCCTT CAGGCATTCT ACTGGGAGAT GAATACCGGT
GAATATGCCA CTGAACACCC TGAAGAAGCA AACCTCTGGA ACCTACTGGC TGAGAGGGCT
CCTGAACTGG CGGAGGCAGG GTTTACTGCA GTCTGGCTGC CGCCGGCCAA TAAGGGTATG
GCAGGCATAC ATGATGTGGG TTATGGCACC TATGACCTCT GGGATCTGGG AGAATTTGAC
CAGAAGGGGA CGGTAAGGAC CAAGTATGGA ACAAAGGGCG AGCTGGAAAA TGCCATTGAT
GCTCTGCATA ACAATGACAT TAAGGTTTAT TTTGATGCTG TCTTAAACCA CAGGATGGGG
GCTGATTATG CTGAAACGGT CCTCCTTGAT GAGAATAGTC GAGATAAACC GGGTCAGTAT
ATCAAGGCCT GGACAGGTTT TAATTTCCCC GGGCGTAATG GTGAATACAG TAATTTTACA
TGGAACGGGC AGTGTTTTGA TGGAACAGAC TGGGATGATT ATAGTAAAGA ATCTGGTAAG
TATTTATTTG ACGAAAAGAG CTGGGACTGG ACCTATAACT GGGATGAAGA CTACCTCATG
GGGGCCGATG TTGATTATGA AAATGAAGCT GTCCAGAATG ATGTAATAGA CTGGGGTCAG
TGGATTATTA ACAACATTGA TTTTGATGGT TTCAGGCTTG ATGCCGTTAA GCATATTGAC
TATAGATTTA TTGACAAATG GATGAGTGCG GTTCAGAACA GTTCAAACAG GGATGTCTTC
TTTGTCGGTG AGGCCTGGGT TGAAGATGTT GATGACCTGA AAGGTTTCCT GGATACAGTC
GGTAATCCCG ACCTCAGGGT CTTTGATTTT CCATTGAGGT CTTTCTTTGT TGACATGCTG
AATGGTGCCT ATATGGCTGA CCTGAGGAAT GCTGGCCTTG TTAATAGCCC CGGGTATGAG
AACAGGGCAG TCACCTTTGT CGATAACCAT GATACTGATC GGGATGAGGG GAGTTATACA
GTTTCAATCT ACAGTCGTAA ATACCAGGCC TATGCCTATA TCCTGACCAG GGCTGAAGGT
GTTCCTACTG TTTACTGGAA GGATTATTAT ATCTGGGAAA TGAAAGAAGG ACTGGATAAG
CTCTTAACGG CAAGACGCTA TTATGCCTAT GGCCCCGGTT ATGAGGTGGA TAACAATGAT
GCCGATATCT ATTCCTATGT CCGCAGTGGT TTCCCTGATG TAGCTGGTGA TGGTCTTGTG
CTAATGATAT CTGATGGAAC TTCAGGGAAT GTTGCAGGCA AATGGATAAA TTCCCGGCAA
CCGGATACAG AGTTTTATGA CCTGACAGGC CACATCAAGG AACATGTTAC TACTGACAGT
GAAGGTTATG GAAACTTCAA GGTAATCAAA AGTGAAGATA AAGGCTGGTC CATCTGGGTT
CCGGTGGAGT AG
|
|---|
| Protein sequence | MVFIKLFIKY KIYAALILLI LLLSGCSNIS EDVNNPNRSL FLIESEPSTG ASVSKNLTEI
ILIFSNDINK VSQLALTDLI TDSDIQGIDY NIEGNKVIIN NFSLEPTCNY RLSYEVIDIY
DNHLQGYIEF LVNQSNYPQI PDQEVNHTIL QAFYWEMNTG EYATEHPEEA NLWNLLAERA
PELAEAGFTA VWLPPANKGM AGIHDVGYGT YDLWDLGEFD QKGTVRTKYG TKGELENAID
ALHNNDIKVY FDAVLNHRMG ADYAETVLLD ENSRDKPGQY IKAWTGFNFP GRNGEYSNFT
WNGQCFDGTD WDDYSKESGK YLFDEKSWDW TYNWDEDYLM GADVDYENEA VQNDVIDWGQ
WIINNIDFDG FRLDAVKHID YRFIDKWMSA VQNSSNRDVF FVGEAWVEDV DDLKGFLDTV
GNPDLRVFDF PLRSFFVDML NGAYMADLRN AGLVNSPGYE NRAVTFVDNH DTDRDEGSYT
VSIYSRKYQA YAYILTRAEG VPTVYWKDYY IWEMKEGLDK LLTARRYYAY GPGYEVDNND
ADIYSYVRSG FPDVAGDGLV LMISDGTSGN VAGKWINSRQ PDTEFYDLTG HIKEHVTTDS
EGYGNFKVIK SEDKGWSIWV PVE
|
|---|
| |