| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hore_06090 |
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| Symbol | |
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| ID | 7314514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothermothrix orenii H 168 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011899 |
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| Strand | + |
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| Start bp | 662143 |
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| End bp | 664788 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643611039 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_002508361 |
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| Protein GI | 220931453 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGACTC ATAAAAAGCT ACTGGCCGGA TTGATGTTAT ATCTAATTAT TTTATCTATA
CCTGGATTTG CTTTTGCCAG TAATGGCATT GATTCACATC CGGTTAAGGT TGATATGAAT
TTTGAAGAAG CAGAGATTCA GGATGTCCTT ACAGCAATTG CTTCTCTTGT AAATATTAAT
CTGGTTGTTG ATAGTTCAGT ATCAGGTGAA ATTACGGTAA AACTTGATAA TATGAGTTTT
AAAGAGGCCC TCGATTATGT TGTTAAAGTA AGTGGACTTG ATTATGTCTG GAAAAATGAT
ACCGTTATTG TAGCCAGTTC AGAAAGGTTG AAGTCTTTTT ATGGGGAAGA ACTGGTAGAA
ACAGTAAGCC TGAAATACTC TGATCCAGTT CATATTTATC AGCTTATCAA GGTGTTTTAC
CCGGAATTAA AAGTTCAGGT TGATTCCAAT AACTTAAAGC TTCTTATGTC CGGCAAACGT
AAAACTATCC TGGCAGCCCG GAATTTGATA GACCGGATTG ATGTGCCTGA TAGTTTAATT
ACAGCAACCT ATGTTGCCAA GTTTATTAAT GCAGACAGCC TGGAAAACCA CCTCAGGCGG
ATTTATCCGG GGCTAGTTCT ATCCTCAGAC CGGGATAATA ATATACTCTT AATATATGGT
TCTAAAAGGA AAGTAAGAGA GGCTTTAGAG CTTGTTAACA GGATAGATTT ACCCAGGAAA
GAGGCTACTT TTATAGTTGA TATTAATAAA GGTGATGTGA CAAGGATTGA AGAAACGGTT
TTAAATTTAT TCCCGGACCT GGTTGTTGAA GGTAATGAAG CCTCACACAA GTTAATTATT
AGCGGTGATA AAGAGGAGGC CCTTAAAGCC AGAGATTTAA TAAAGGAAAT CGATATCGGT
GAGGAAATAG ATACTGAGGT AGTCAGGGTA GACTATGGTA ACCTTGATAA TCTTATCTCA
GTCATTCAGG GCTTATTCCC GGATATAAGG TTACAGAGTA ATCCCCTTAA AAAAGAAATT
ATTATTAAGG GAAATACCAG TGAAGTTCAG GAGATTGTTT CCCTGGTTAA CAGCCTGGAT
ATCCCCAGAA GACAGGTAAT AATTGAGGCC AGGTTTGAAG AAATATCGGC CAATAAAATA
TCTGAGTTTG GTATGAGACC GAATTTAAGT GAAATTCAGT TTATTTTTGA CGAAGCCACC
AGGGAGCTGA AGTCAATGAA TATTACCTGG CCTGAATATC TAAGATTTCT GGAGGAGGAG
GGACAGGCCA ATATGCTGGC CAATCCGAGG TTGCTTACCC TGAATGGAGA AAATGCCAGG
CTTTTAATAG GAGATAAAGT TCCGGTTAAG ATTGAAGAAA CTTCAGGGTC TTCAGAAGAA
TCAGAAGGTG AAAGCAATGC AGTAAGCTAT GAATATATTG ATGTTGGTAT TTCTTTAGAA
TTTACTCCCT GGATTACTGA AGATGGCTAT ATTATTATGG ATGTGGCCCC TGAGGTCAGC
AGCCTTGGTT CCCCCATGGG TGGTGGAGAA TCGATACCTC CAATAAAAAC CAGGGAAGCC
CGGACCAAAA TCAGATTAAA GGATGGGCAG ACCTTTGCCA TCGGTGGTTT AATTAGGGAA
GATGAACTCG AGAGTATTGC CAAGGTGCCT TTGCTCGGAG ACATACCTTT ATTGGGAACC
TTATTTAGAA GGTCACAGAC AGATAAGGTT AAAACCGAAG TTGTTATTTT TATCACACCA
CATATTGTCA AGGAATCATT TGGCGATATA ACAACGGTAG ATCAGAGTCG GGAAAAGGTT
TTATCTAATA AAACCGATGA ACCTTCAAAA AAGGAATCCA CCCCGGATAA AGAGGTTGTA
GATACAGGTG GAAAGGATTC GGAAAATATT TCAGTAGTCA GTAAAGTTTC CAGAGATGGG
GAAATTAAAG AAGGAAAAAC CGGGAGTGAA GAAGAAGTAG ATAATAATCT TGCAGGGAAT
AAAAAAGAAG ATAGTGAGCC CCATACAACC GAAAAAGAAG GTAGTAAGGG TAGTGAAGAT
GAAATAGATA TCACCAGTAA GAACAGTACC AGTGAAACAA CTGAAAATGA AGAAAATAGC
GAGGAGACCA ATACCGGGGA AATTATTAAG AGTAAAGATG ATGTGACCGG TGAAAGCACA
GACGACTTTG GTGAAAAAAA CATAATTGAA GGAGAAGTAA ATAAAAAAGA TGTTAATAAA
GCTGAAGTAA ATGAAACTGA AGAAACAGTT GATGAGGCTA CCAGAAAGGA ACTTAAAAAT
ATAATTAATA GTGAAATTAT AAAACCAGGT AATGAAAGTA GTGACAATAA CCTACCTGAA
TATTATAATA TATTGTATAA GGTAAAACCG GGTGATACCC TGGCCTCAAT AGCAAGGAAG
TATGGTCTGT TTGTCAGTAA CATAAAACTG GTAAATGGAA TAGATGAAGT AAAAACAGGA
CAGACAATAA CCCTGCCGAT ACCAAAAAGC CATTTGTATA TAATTAAAAA AGGTGAAACC
CTGTGGCAGA TATATTTAAA ATTTGGTGTC AGTGTTTCTG TCCTGCAAGA AATCAATAAT
ATAAAAGATG TAAGAAAAAT TCCGGCAGGA ACTTTAATAA TTATTCCAAA AAGGATAAAT
GACTAG
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| Protein sequence | MKTHKKLLAG LMLYLIILSI PGFAFASNGI DSHPVKVDMN FEEAEIQDVL TAIASLVNIN
LVVDSSVSGE ITVKLDNMSF KEALDYVVKV SGLDYVWKND TVIVASSERL KSFYGEELVE
TVSLKYSDPV HIYQLIKVFY PELKVQVDSN NLKLLMSGKR KTILAARNLI DRIDVPDSLI
TATYVAKFIN ADSLENHLRR IYPGLVLSSD RDNNILLIYG SKRKVREALE LVNRIDLPRK
EATFIVDINK GDVTRIEETV LNLFPDLVVE GNEASHKLII SGDKEEALKA RDLIKEIDIG
EEIDTEVVRV DYGNLDNLIS VIQGLFPDIR LQSNPLKKEI IIKGNTSEVQ EIVSLVNSLD
IPRRQVIIEA RFEEISANKI SEFGMRPNLS EIQFIFDEAT RELKSMNITW PEYLRFLEEE
GQANMLANPR LLTLNGENAR LLIGDKVPVK IEETSGSSEE SEGESNAVSY EYIDVGISLE
FTPWITEDGY IIMDVAPEVS SLGSPMGGGE SIPPIKTREA RTKIRLKDGQ TFAIGGLIRE
DELESIAKVP LLGDIPLLGT LFRRSQTDKV KTEVVIFITP HIVKESFGDI TTVDQSREKV
LSNKTDEPSK KESTPDKEVV DTGGKDSENI SVVSKVSRDG EIKEGKTGSE EEVDNNLAGN
KKEDSEPHTT EKEGSKGSED EIDITSKNST SETTENEENS EETNTGEIIK SKDDVTGEST
DDFGEKNIIE GEVNKKDVNK AEVNETEETV DEATRKELKN IINSEIIKPG NESSDNNLPE
YYNILYKVKP GDTLASIARK YGLFVSNIKL VNGIDEVKTG QTITLPIPKS HLYIIKKGET
LWQIYLKFGV SVSVLQEINN IKDVRKIPAG TLIIIPKRIN D
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