| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_4065 |
|---|
| Symbol | |
|---|
| ID | 8546466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5584667 |
|---|
| End bp | 5586256 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 646388742 |
|---|
| Product | Pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_003268457 |
|---|
| Protein GI | 262197248 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.125159 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.183613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATTCT CGAATTGCGA GTTGCCGGCT CTGTTCTCTG ACGAAGAACT GGATTTCGAC
GAGGATTTCA CGCGCGAGGC GCCCGCGAGC ATCGCGCCCG AGCGCTTCCG CGACATGGGC
CATCGTCTCG TCGATCGCAT TTCTGGACAC ATGTCCGGTA TGCGCGAGCG GCCGGTCGCC
AAGCAGCACG GTCTCGAGAC CGTGCGCGAG GCGCTGGGTT CGATGCCGCT GCCCGAGAGC
GGGATGGCGG CCGAGGAGGT GCTCGAGCGC GCCACCTCGC TGCTCATGGA GCACTCGGTG
ATGACCGCGC ACCCGCGCTT CTGGGCCTAC GTGCACGGCG CGCCCAGCCC GCTCGGCGCG
CTCGCCGATT TCCTGGCCTC GGCCATCAAC TCGCCGGCGA CCAGCTTCCA GACCGGCCCC
ATGGCCTCGG CCATCGAGAA GCAGGCGGTC GAGTGGATGG CCGAGCTGGT CGGTTTCCCG
CAGGATTGCG GCGGCATCTT CCTGTCCGGC GGCTCGATGG CGACCATCAC CGCGGTCACC
ACCGCGCTGC GCCGCAAGGC CGGCTGGGAC GTGCGCGGCG AGGGCGTCAC CGGCATGCGC
GGCCGCCTGC TGCGGCTCTA CGCCACCGCC CAGACCCATA GCTGCGTGCG CACGGCGGCC
GATATGTGCG GCCTCGGCGA GAGCGCCATC CACCGCGTGC CCACCGACGC CATGGGCCGC
ATGGATCCCA ACGCGCTGGC CGCCTGCATC GAGCTCGACC GCCGCTCGGG TCTGCGTCCC
TTCCTGGTGG TCGGCACCGC GGGCACGACC TCGACCGGCA GCATCGACCC GCTGGCCGAG
ATCGCGGCGG TGTGCCGCGA GAGCGACCTG TGGTTTCACG TCGATGGCGC CTACGGTGCC
GTCGCCGTGG TCTCGCCCGA CGCGCCCGAG GCGCTCAAGG GCCTGCGCGA GGCCGACAGC
CTGGCGCTCG ATCCCCACAA GTGGATGTAC ATGCCGCTCG AGGCCGGCTG CCTGCTGATG
CGCGATCGCC ACGCGCTCTA CGACACCTTC TGCTACCGCG CCGACTACTA CTCGCACAAC
CAGGCGGCGC CCGATGACGC GCTGCCCTTC CGCGACCAGA GCGCGCAGAC CTCGCGCGGC
CTGCGCGCGC TCAAGGTGTG GCTGGCGCTG CAGAGCATCG GCCGCGACGG CTACCGGCAG
ATGATCAGCG ACGACATGGC CCTGGCCAAG CGCCTGTATC GCAAGGTCGC GGCGCATCCC
GCGCTCGAGG CGCTGTCGCA CAGCCTGAGC ATCACCACCC TGCGCTACGC GCCGCCGGAG
CTGGCCGCCA ACGTGAGCCC GGCGTATCTC GACCTGCTCA ACGAGCGCAT CCTCAAGCGC
CTGCAGAGCA CCGGCATGGC CTATCCCTCG CACACCTATG TCGATGGCAA GTACGTGCTG
CGCGTGTGCA TCGTCAATCA CAACACCCAG GTCTGCGACG TCGATGCGCT GCCGCAGATG
GTCGCGACCC TGGGCGACGC GCTGCACCAA GAGGCGCTCA CCGAGCTGGC CGCGCGCATG
GCTGACGAGA GCAGCGGCAT GCTTCTGTGA
|
|---|
| Protein sequence | MIFSNCELPA LFSDEELDFD EDFTREAPAS IAPERFRDMG HRLVDRISGH MSGMRERPVA
KQHGLETVRE ALGSMPLPES GMAAEEVLER ATSLLMEHSV MTAHPRFWAY VHGAPSPLGA
LADFLASAIN SPATSFQTGP MASAIEKQAV EWMAELVGFP QDCGGIFLSG GSMATITAVT
TALRRKAGWD VRGEGVTGMR GRLLRLYATA QTHSCVRTAA DMCGLGESAI HRVPTDAMGR
MDPNALAACI ELDRRSGLRP FLVVGTAGTT STGSIDPLAE IAAVCRESDL WFHVDGAYGA
VAVVSPDAPE ALKGLREADS LALDPHKWMY MPLEAGCLLM RDRHALYDTF CYRADYYSHN
QAAPDDALPF RDQSAQTSRG LRALKVWLAL QSIGRDGYRQ MISDDMALAK RLYRKVAAHP
ALEALSHSLS ITTLRYAPPE LAANVSPAYL DLLNERILKR LQSTGMAYPS HTYVDGKYVL
RVCIVNHNTQ VCDVDALPQM VATLGDALHQ EALTELAARM ADESSGMLL
|
|---|
| |