Gene Hoch_2424 details

Gene Information

• Locus tag: Hoch_2424
• ID: 8544810
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Haliangium ochraceum DSM 14365
• Kingdom: Bacteria
• Replicon accession: NC_013440
• Strand: +
• Start bp: 3351353
• End bp: 3351955
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 646387123
• Product: SCP-like extracellular
• Protein accession: YP_003266854
• Protein GI: 262195645
• COG category: [S] Function unknown
• COG ID: [COG2340] Uncharacterized protein with SCP/PR1 domains

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.572617
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.29276
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCACCGC TGTCGAAGTC GTCGTTTGCG ACGCTGTGCG CATTGAGTTT GCTGCTCGGT 
TGCACCGATG AGCCCTTCGA CGAGCCGCCC GGCGGCGGCG TGGACGCGTC GCCGGACAGC 
GGCGGTGGCG GCGGCGGTGG CGGTACGCCC TCGGTCGACT ATTGCGCTGC AGTGGCCGAC 
TGGCCGGCGG CGTGGCGCGA GGTCGAGGCC GCGTTGCTCG AGGCTGTCAA CCGCCAGCGT 
GGCGAGGGCG CCGATTGCGG CAGTGAGGGC AGCTTCGGAC CGGCCGAGCC GCTGTCCTCG 
GACGCGGCCC TCGACTGCGC CGCGCGCACA CACTCCCTGG ATATGGTCAC GCGCGACTTC 
TTCGACCACA CCAATCCCGA CGGCGAGCGT TTTTCCGACC GCATGTCCCG CGCCGGTTAC 
GAGTTCCGCG CGGGCGGTGA AAATATCGCC TACGGCTCGA GCACGGTCGA TGGCGTGATG 
GAGCAATGGA TGGGCAGTGA CGGGCACTGC GCCAACATCA TGCGCCCGGG CTACGTCCAC 
CTCGGCATCG GCTATCACGC CGACAGCCGG CTGTGGACCC AGGTCTTTGG CACTCCGCGC 
TAG 

 

Protein sequence

MSPLSKSSFA TLCALSLLLG CTDEPFDEPP GGGVDASPDS GGGGGGGGTP SVDYCAAVAD 
WPAAWREVEA ALLEAVNRQR GEGADCGSEG SFGPAEPLSS DAALDCAART HSLDMVTRDF 
FDHTNPDGER FSDRMSRAGY EFRAGGENIA YGSSTVDGVM EQWMGSDGHC ANIMRPGYVH 
LGIGYHADSR LWTQVFGTPR